Elderly gut microbiome, Ginowan City, Okinawa (cross-sectional)
67 fecal microbiome samples from elderly participants (aged 65+) in Ginowan City, Okinawa, Japan, collected in a cross-sectional study design. machine-written summary
148 samples · 148 runs · JP · Adult · 2026 · 8.82 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 497 sample values (collection date, country, latitude, location region, longitude) |
| ✓ Abstract / description | 229 sample values (location locality, location region) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 66 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 148 | 100% | ||||
| country | 148 | 100% | 148 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 148 | 100% | 148 | |||
| detailed_location | 148 | 100% | ||||
| location_locality | 148 | 100% | 148 | |||
| location_region | 148 | 100% | 67 | 81 | ||
| latitude | 67 | 45% | 67 | |||
| longitude | 67 | 45% | 67 |
Archive description
We sequenced the total microbial community DNA from fecal samples collected from participants aged 65 years and the elderly in Ginowan City, Okinawa.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of elderly and adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Human gut metagenome from the”
- body site study.description · “community DNA from fecal samples collected from”
- life stage study.title · “metagenome from the elderly population in Ginowan”
- life stage study.description · “years and the elderly in Ginowan City,”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD01792496 | collection_date | 2022 | R1 | 0.90 | biosample.attribute:collection_date | 2022 |
| SAMD01792496 | country | JP | R1 | 0.90 | sample.attr.geo_loc_name | Japan |
| SAMD01792496 | latitude | 26.2420 | R1 | 0.90 | biosample.attribute:lat_lon | 26.242 N 127.7599 E |
| SAMD01792496 | location_locality | Ginowan City | R4 | 0.40 | ena.study_title | Ginowan City, Okinawa |
| SAMD01792496 | location_region | Okinawa | R1 | 0.60 | biosample.attribute:lat_lon | 26.242 N 127.7599 E |
| SAMD01792497 | location_region | Okinawa | R4 | 0.40 | ena.study_title | Ginowan City, Okinawa |
| SAMD01792496 | longitude | 127.7599 | R1 | 0.90 | biosample.attribute:lat_lon | 26.242 N 127.7599 E |
Sequencing
148 runs over 148 samples · mean 8.88 Gbp per run (median 8.82 Gbp, total 1,314.32 Gbp; 148 runs with a base count) · layout PAIRED 148 · platform ILLUMINA 148 · models Illumina NovaSeq 6000 (148) · 99% of runs with a Sandpiper profile · first public 2026-01-11
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJDB40001.csv.gz (4.5 KB) · parquet (75.3 KB) — all 148 samples, every field with route and confidence · PRJDB40001_determinations.csv.gz (4.2 KB) — 726 evidence rows