Human gut metagenome samples from Wuxi, China
80 fecal samples from human subjects in Wuxi, China. No health condition, intervention, or study design details are provided beyond this. machine-written summary
80 samples · 80 runs · CN · Age unknown · 2025 · 18.27 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 400 sample values (collection date, country, location locality, subject id, timepoint) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal
32 of 48 people sampled more than once (64 samples; median 2, up to 2 per person) · follow-up median 43 d (max 48 d) · median interval between samples 43 d (time from collection dates).
Each row is one person (32 shown); dots are samples at days since that person's first sample.
Genera, mean relative abundance over 75 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 80 | 100% | 80 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 80 | 100% | 80 | |||
| collection_date | 80 | 100% | 80 | |||
| detailed_location | 80 | 100% | ||||
| location_locality | 80 | 100% | 80 | |||
| timepoint_label | 80 | 100% | 80 |
Archive description
hunman
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.80. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “fecal sample”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN42178102 | collection_date | 2022-11-01 | R1 | 0.90 | biosample.attribute:collection_date | 2022-11-01 |
| SAMN42178102 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Wuxi |
| SAMN42178102 | location_locality | Wuxi | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Wuxi |
| SAMN42178102 | subject_id | 4 | R1 | 0.70 | sample.name_rule:title | 4 |
| SAMN42178102 | timepoint_label | a | R1 | 0.85 | biosample.attribute:DESCRIPTION | DESCRIPTION: a |
Sequencing
80 runs over 80 samples · mean 17.62 Gbp per run (median 18.27 Gbp, total 1,409.82 Gbp; 80 runs with a base count) · layout PAIRED 80 · platform ILLUMINA 80 · models Illumina NovaSeq 6000 (80) · 94% of runs with a Sandpiper profile · first public 2025-07-03 – 2025-07-27
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1129893.csv.gz (3.1 KB) · parquet (73.1 KB) — all 80 samples, every field with route and confidence · PRJNA1129893_determinations.csv.gz (3.9 KB) — 400 evidence rows