Flagellin diversity in UK human gut metagenomes
64 human gut metagenome samples from the United Kingdom, exploring flagellin diversity; no specific health condition or intervention reported. machine-written summary
64 samples · 64 runs · GB · Age unknown · 2022 · 2.73 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 447 sample values (collection date, country, latitude, location region, longitude, subject id, timepoint) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
32 of 32 people sampled more than once (64 samples; median 2, up to 2 per person).
Genera, mean relative abundance over 52 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 64 | 100% | 64 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 64 | 100% | 64 | |||
| collection_date | 64 | 100% | 64 | |||
| detailed_location | 64 | 100% | ||||
| latitude | 64 | 100% | 64 | |||
| location_region | 64 | 100% | 64 | |||
| longitude | 64 | 100% | 64 | |||
| timepoint_label | 63 | 98% | 63 |
Archive description
Exploring flagellin diversity in human gut metagenomes
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.68. Assay shotgun_dna.
- host run.scientific_name · “human metagenome”
- body site study.description · “human gut metagenomes”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA9957108 | collection_date | 2008-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2008-01-01 |
| SAMEA9957108 | country | GB | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | United Kingdom |
| SAMEA9957108 | latitude | 51.5099 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 51.509865 -0.118092 |
| SAMEA9957108 | location_region | England | R1 | 0.60 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 51.509865 -0.118092 |
| SAMEA9957108 | longitude | -0.1181 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 51.509865 -0.118092 |
| SAMEA9957108 | subject_id | 1002372 | R1 | 0.70 | sample.name_rule:title | 1002372_1_1 |
| SAMEA9957108 | timepoint_label | 1 | R1 | 0.70 | sample.name_rule:title | 1002372_1_1 |
Sequencing
64 runs over 64 samples · mean 3.21 Gbp per run (median 2.73 Gbp, total 205.36 Gbp; 64 runs with a base count) · layout PAIRED 64 · platform ILLUMINA 64 · models Illumina HiSeq 3000 (64) · 81% of runs with a Sandpiper profile · first public 2022-11-30
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJEB47543.csv.gz (2.5 KB) · parquet (72.4 KB) — all 64 samples, every field with route and confidence · PRJEB47543_determinations.csv.gz (3.8 KB) — 447 evidence rows