Infant gut metagenome samples from China
58 gut metagenome samples from newborn infants in China. No condition, intervention, or design information is provided in the available sources. machine-written summary
58 samples · 58 runs · CN · Infant / toddler · 2024 · 8.17 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 116 sample values (collection date, country) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 54 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 58 | 100% | 58 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 58 | 100% | 58 |
Archive description
This study include 58 metagenome data from the newborn infants.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler and neonate by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
- life stage study.title · “Infant metagemone data”
- life stage study.description · “data from the newborn infants.”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA112190002 | collection_date | 2018 | R1 | 0.85 | biosample.attribute:collection_date | 2018 |
| SAMEA112190002 | country | CN | R1 | 0.90 | biosample_attr | China |
Sequencing
58 runs over 58 samples · mean 8.30 Gbp per run (median 8.17 Gbp, total 481.59 Gbp; 58 runs with a base count) · layout PAIRED 58 · platform ILLUMINA 58 · models Illumina HiSeq X (58) · 93% of runs with a Sandpiper profile · first public 2024-11-30
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJEB57911.csv.gz (2.3 KB) · parquet (70.8 KB) — all 58 samples, every field with route and confidence · PRJEB57911_determinations.csv.gz (874 B) — 116 evidence rows