Gut VLP metagenome from South Korea, cross-sectional
53 virus-like particle (VLP) gut metagenome samples from South Korea, cross-sectional design; health conditions and age not specified in curated data. machine-written summary
53 samples · 53 runs · KR · Age unknown · 2025 · 4.35 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 106 sample values (collection date, country) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 53 sample values (subject id) · PMC11986028 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 52 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 53 | 100% | 53 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 53 | 100% | 53 | |||
| collection_date | 53 | 100% | 53 |
- Characterization of the phyllosphere virome of fresh vegetables and potential transfer to the human gut. 2025 PMID 40210629 PMC11986028 own_data
Archive description
VLP sequencing data of Korean gut
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.75. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site study.title · “VLP metagenome of Korean gut”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA117844864 | collection_date | 2021-04-02 | R1 | 0.90 | biosample.attribute:collection_date | 2021-04-02 |
| SAMEA117844864 | country | KR | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | South Korea |
| SAMEA117844864 | subject_id | SAMEA117844864 | R3 | 0.70 | design.one_sample_per_subject:fulltext | We recruited a total of 53 healthy individuals |
Sequencing
53 runs over 53 samples · mean 4.48 Gbp per run (median 4.35 Gbp, total 237.18 Gbp; 53 runs with a base count) · layout PAIRED 53 · platform ILLUMINA 53 · models Illumina NovaSeq 6000 (53) · 100% of runs with a Sandpiper profile · first public 2025-03-24
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJEB87348.csv.gz (2.3 KB) · parquet (71.0 KB) — all 53 samples, every field with route and confidence · PRJEB87348_determinations.csv.gz (1.7 KB) — 159 evidence rows