Systemic bacteriophage translocation, gut microbiome
142 samples from Poland examining systemic translocation of bacteriophages as part of the human intestinal microbiome; no health conditions, interventions, or detailed design information are specified. machine-written summary
142 samples · 142 runs · PL · Age unknown · 2022 · 1.28 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 852 sample values (collection date, country, latitude, location region, longitude, subject id) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
37 of 38 people sampled more than once (74 samples; median 2, up to 2 per person).
Genera, mean relative abundance over 21 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 142 | 100% | 142 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 142 | 100% | 142 | |||
| collection_date | 142 | 100% | 142 | |||
| detailed_location | 142 | 100% | ||||
| latitude | 142 | 100% | 142 | |||
| location_region | 142 | 100% | 142 | |||
| longitude | 142 | 100% | 142 |
Archive description
Preludium 16 2018/31/N/NZ6/02584
How this project entered the registry
Classified as human gut / stool / blood / tissue / internal fluids shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.62. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “gut metagenome”
- body site run.scientific_name · “human blood metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN30550145 | collection_date | 2018-03-13 | R1 | 0.90 | biosample.attribute:collection_date | 2018-03-13 |
| SAMN30550145 | country | PL | R1 | 0.90 | sample.attr.geo_loc_name | Poland |
| SAMN30550145 | latitude | 51.1079 | R1 | 0.90 | biosample.attribute:lat_lon | 51.107883 N 17.038538 E |
| SAMN30550145 | location_region | Lower Silesian Voivodeship | R1 | 0.60 | biosample.attribute:lat_lon | 51.107883 N 17.038538 E |
| SAMN30550145 | longitude | 17.0385 | R1 | 0.90 | biosample.attribute:lat_lon | 51.107883 N 17.038538 E |
| SAMN30550145 | subject_id | 1 | R1 | 0.70 | sample.name_rule:library_names | library_names: Gut_sample Patient no 1 |
Sequencing
142 runs over 142 samples · mean 1.58 Gbp per run (median 1.28 Gbp, total 224.15 Gbp; 142 runs with a base count) · layout PAIRED 142 · platform ILLUMINA 142 · models NextSeq 550 (142) · 20% of runs with a Sandpiper profile · first public 2022-08-30 – 2026-07-16
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA874475.csv.gz (4.4 KB) · parquet (75.0 KB) — all 142 samples, every field with route and confidence · PRJNA874475_determinations.csv.gz (7.3 KB) — 852 evidence rows