PREDICT 3 UK gut metagenome samples (UK23ART)
2244 gut metagenome samples from the United Kingdom, part of the PREDICT 3 UK23ART project; no health condition, intervention, or study design details are specified in the available sources. machine-written summary
2,245 samples · 2,245 runs · GB · Age unknown · 2024 · 4.70 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 4,490 sample values (collection date, country) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 2,025 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 2,245 | 100% | 2,245 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 2,245 | 100% | 2,245 |
Archive description
PREDICT 3 UK23ART
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA117323065 | collection_date | 2023 | R1 | 0.90 | biosample.attribute:collection_date | 2023 |
| SAMEA117323685 | collection_date | 2023 | R1 | 0.85 | biosample.attribute:collection date | 2023 |
| SAMEA117323065 | country | GB | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | United Kingdom |
Sequencing
2,245 runs over 2,245 samples · mean 5.04 Gbp per run (median 4.70 Gbp, total 11,319.06 Gbp; 2,245 runs with a base count) · layout PAIRED 2,245 · platform ILLUMINA 2,245 · models unspecified (2,245) · 90% of runs with a Sandpiper profile · first public 2024-11-22 – 2025-04-11
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJEB75465.csv.gz (48.1 KB) · parquet (149.7 KB) — all 2,245 samples, every field with route and confidence · PRJEB75465_determinations.csv.gz (18.3 KB) — 4,490 evidence rows