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PRJEB32411 ERP115095

Gut microbiome in hypertension vs normotensive controls, Spain

Gut metagenomic signature in hypertension: a cross-sectional study

Case-control study of 61 fecal samples from Spain comparing non-treated hypertensive and normotensive adults, analyzing gut microbiota composition, bacterial function, and microbial metabolites (SCFA, TMAO). machine-written summary

61 samples · 61 runs · ES · Age unknown · 2020 · 0.29 Gbp / sample

Sources
✓Sequence archive 305✓Abstract / description 61✓Full text 183○Supplementary tables–External resources–User contribution–Human verified

Checked this project's papers and archive records yourself? Mark it human-verified.

what each source gave
✓ Sequence archive305 sample values (collection date, country, latitude, location region, longitude)
✓ Abstract / description61 sample values (health condition detail)
✓ Full text183 sample values (location locality, location site, subject id) · PMC7160119, PMC8231825
○ Supplementary tablesfiles read; no table could be matched to the samples
– External resourcesnot covered by the external resources we ingest
– User contributionnothing uploaded yet · share metadata
– Human verifiednot yet checked by a person · I checked this project — verify it
Samples at a glance
1 sampling locations · 1 country
Age
unknown61
Country
ES61
Body site
primary61
Sequencing depth per sample · this project all projects
all projects, 0–0.03 Gbp: 25,080 samples (4 %)all projects, 0.03–0.1 Gbp: 17,066 samples (3 %)this project, 0.03–0.1 Gbp: 3 samplesall projects, 0.1–0.3 Gbp: 29,179 samples (5 %)this project, 0.1–0.3 Gbp: 31 samplesall projects, 0.3–1 Gbp: 47,044 samples (8 %)this project, 0.3–1 Gbp: 27 samplesall projects, 1–3 Gbp: 124,983 samples (22 %)all projects, 3–10 Gbp: 253,728 samples (44 %)all projects, 10–30 Gbp: 72,533 samples (13 %)all projects, 30–100 Gbp: 3,024 samples (1 %)all projects, 100–300 Gbp: 106 samples (0 %)all projects, ≥ 300 Gbp: 9 samples (0 %)project median 0.29 Gbp per sample0130Gbp
Community composition

No Sandpiper profile for this project's samples yet.

Field coverage
fieldsamplescoverageR1R2R3R4
age_category0 0%
country61 100%61
health_condition0 0%
subject_id61 100%61
collection_date61 100%61
detailed_location61 100%
health_condition_detail61 100%61
latitude61 100%61
location_locality61 100%61
location_region61 100%61
location_site61 100%61
longitude61 100%61
Papers (2)
  • Gut metagenomic and short chain fatty acids signature in hypertension: a cross-sectional study. 2020 PMID 32296109 PMC7160119 own_data
  • Gut Microbiota Profile and Its Association with Clinical Variables and Dietary Intake in Overweight/Obese and Lean Subjects: A Cross-Sectional Study. 2021 PMID 34199239 PMC8231825 own_data
Details
Archive description

Background: The potential role of gut microbiome in metabolic diseases has been revealed, especially in cardiovascular diseases. Hypertension is one of the most prevalent cardiovascular diseases worldwide, yet whether gut microbiota participates in the development of hypertension remains largely unknown. To investigate this issue, we carried out comprehensive gut microbiota analysis and targeted metabolomics in a cohort of 29 non-treated hypertensive (HT) subjects and 32 normotensive (NT) controls. We assessed fecal microbiota composition by 16S rRNA gene sequencing and bacterial functions by metagenomic analysis. The microbial metabolites analysed were short chain fatty acids (SCFA) both in plasma and feces, and trimethylamine N-oxide (TMAO) in plasma.Results: The overall bacterial composition and the richness and diversity of bacterial community in the two groups were not significantly different. When the relative abundance of bacteria at OTU level was tested, Ruminococcaceae NK4A214, Ruminococcaceae_UCG-010, Christensenellaceae_R-7, Faecalibacterium prausnitzii and Roseburia hominis were found to be significantly enriched in NT group, whereas, Bacteroides coprocola Intestimonas and genera of Lachnospiraceae were increased in HT patients. We found a positive correlation between the HT-associated species and systolic blood pressure and diastolic blood pressure after adjusted for measured confounders. SCFA showed antagonistic results in plasma and feces, detecting in HT subjects significant higher levels in feces and lower levels in plasma compared to NT group. TMAO did not show significant differences between groups.Conclusions: Overall, our results present a disease classifier based on microbiota and bacterial metabolites to discriminate hypertensive individuals from NT controls in a first disease stage prior to drug treatment. HT subjects showed a particular SCFA profile in feces and plasma that could indicate a less efficient SCFA absorption in HT subjects.

How this project entered the registry

Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.45. Assay shotgun_dna.

  • host study.description · “29 non-treated hypertensive (HT) subjects”
  • host run.scientific_name · “human gut metagenome”
  • body site study.description · “fecal microbiota composition”
Evidence examples (one per field × route)
samplefieldvaluerouteconf.sourcequote
SAMEA5605024collection_date2016R10.90biosample.attribute:collection_date2016
SAMEA5605024countryESR10.90sample.attr.geographic_location_country_and_or_seaSpain
SAMEA5605024health_condition_detailmixed_case_control: 29 non-treated hypertensive subjects vs 32 normotensive controlsR40.50study.description29 non-treated hypertensive (HT) subjects and 32 normotensive (NT) controls
SAMEA5605024latitude41.1561R10.90biosample.attribute:geographic_location_latitude+geographic_location_longitude41.1561203 1.1068701
SAMEA5605024location_localityReusR30.70paper.fulltext.methodsParticipants were recruited in Reus (Spain)
SAMEA5605024location_regionCataloniaR10.60biosample.attribute:geographic_location_latitude+geographic_location_longitude41.1561203 1.1068701
SAMEA5605024location_siteHospital Universitari Sant Joan (HUSJ)R30.70paper.fulltext.methodsadvertisements in the Hospital Universitari Sant Joan (HUSJ)
SAMEA5605024longitude1.1069R10.90biosample.attribute:geographic_location_latitude+geographic_location_longitude41.1561203 1.1068701
SAMEA5605024subject_idSAMEA5605024R30.75design.one_sample_per_subject:fulltexta cross-sectional study of 29 non-treated hypertensive (HT) and 32 normotensive (NT) subjects
Sequencing

61 runs over 61 samples · mean 0.27 Gbp per run (median 0.29 Gbp, total 16.74 Gbp; 61 runs with a base count) · layout PAIRED 61 · platform ILLUMINA 61 · models Illumina MiSeq (61) · 0% of runs with a Sandpiper profile · first public 2020-07-02

Authors (18)

Calderón-Pérez L first · Gosalbes MJ · Yuste S · Valls RM · Pedret A · Llauradó E · Jimenez-Hernandez N · Artacho A · Pla-Pagà L · Companys J · Ludwig I · Romero MP · Rubió L · Solà R last · Jiménez-Hernández N · Sandoval-Ramirez BA · Del Bas JM · Caimari A

Help complete this project

2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata

Downloads

PRJEB32411.csv.gz (2.6 KB) · parquet (73.0 KB) — all 61 samples, every field with route and confidence · PRJEB32411_determinations.csv.gz (4.0 KB) — 549 evidence rows

Samples (61 · every field this project has values for · hover a cell for its source)
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