Human stool metagenomes - Church Lab
534 human stool metagenome samples; no information on country, age, health conditions, interventions, or study design is given. machine-written summary
534 samples · 534 runs · Age unknown · 2026 · 1.41 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 2,136 sample values (collection date, latitude, location region, longitude) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 534 | 100% | 534 | |||
| detailed_location | 534 | 100% | ||||
| latitude | 534 | 100% | 534 | |||
| location_region | 534 | 100% | 534 | |||
| longitude | 534 | 100% | 534 |
Archive description
Metagenomes of human stool samples
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site study.description · “Metagenomes of human stool samples”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN57165601 | collection_date | 2025-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2025-01-01 |
| SAMN57165601 | latitude | 34.0699 | R1 | 0.90 | biosample.attribute:lat_lon | 34.0699 N 118.4438 W |
| SAMN57165601 | location_region | California | R1 | 0.60 | biosample.attribute:lat_lon | 34.0699 N 118.4438 W |
| SAMN57165601 | longitude | -118.4438 | R1 | 0.90 | biosample.attribute:lat_lon | 34.0699 N 118.4438 W |
Sequencing
534 runs over 534 samples · mean 1.34 Gbp per run (median 1.41 Gbp, total 713.23 Gbp; 534 runs with a base count) · layout SINGLE 534 · platform ILLUMINA 534 · models NextSeq 2000 (534) · 0% of runs with a Sandpiper profile · first public 2026-04-12
Authors (0)
No author record.
Help complete this project
4 of the 4 core fields are below 50% coverage: age_category, country, health_condition, subject_id. Share metadata
Downloads
PRJNA1450681.csv.gz (12.3 KB) · parquet (88.6 KB) — all 534 samples, every field with route and confidence · PRJNA1450681_determinations.csv.gz (11.6 KB) — 2,136 evidence rows