Fecal metagenome in bronchiectasis vs healthy controls, adults
Fecal metagenomic sequencing from 70 adult samples in a case-control study comparing patients with bronchiectasis to healthy controls. machine-written summary
70 samples · 70 runs · Adult · 2025 · 8.34 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 312 sample values (health condition, health condition detail, latitude, location region, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 69 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 70 | 100% | ||||
| country | 0 | 0% | ||||
| health_condition | 70 | 100% | 70 | |||
| subject_id | 0 | 0% | ||||
| health_condition_detail | 70 | 100% | 70 | |||
| latitude | 70 | 100% | 70 | |||
| longitude | 70 | 100% | 70 | |||
| detailed_location | 32 | 46% | ||||
| location_region | 32 | 46% | 32 |
Archive description
Fecal metagenomic sequencing of patients with bronchiectasis and healthy controls.
How this project entered the registry
Classified as human gut / stool / lower respiratory shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Fecal of bronchiectasis Metagenome”
- body site study.description · “Fecal metagenomic sequencing of”
- body site study.title · “Fecal of bronchiectasis Metagenome”
- body site study.description · “of patients with bronchiectasis and healthy controls.”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN39107480 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:alias | H10 |
| SAMN39107480 | health_condition_detail | Healthy control (per project description) | R1 | 0.70 | sample.name_rule:alias | H10 |
| SAMN39107480 | latitude | 31.2300 | R1 | 0.90 | biosample.attribute:lat_lon | 31.23 N 121.47 E |
| SAMN39107480 | location_region | Shanghai Shi | R1 | 0.60 | biosample.attribute:lat_lon | 31.23 N 121.47 E |
| SAMN39107480 | longitude | 121.4700 | R1 | 0.90 | biosample.attribute:lat_lon | 31.23 N 121.47 E |
Sequencing
70 runs over 70 samples · mean 8.43 Gbp per run (median 8.34 Gbp, total 590.41 Gbp; 70 runs with a base count) · layout SINGLE 70 · platform ILLUMINA 70 · models Illumina NovaSeq 6000 (70) · 99% of runs with a Sandpiper profile · first public 2025-03-23
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: country, subject_id. Share metadata
Downloads
PRJNA1056769.csv.gz (2.8 KB) · parquet (73.0 KB) — all 70 samples, every field with route and confidence · PRJNA1056769_determinations.csv.gz (3.6 KB) — 312 evidence rows