Gut fungal metagenome, 134 samples, Beijing, China
A gut fungal metagenome study of 134 samples from Beijing, China. No health conditions, interventions, or specific design details are given in the available sources. machine-written summary
134 samples · 134 runs · CN · Age unknown · 2022 · 80.3 Mbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 268 sample values (country, location locality) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 134 | 100% | 134 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| detailed_location | 134 | 100% | ||||
| location_locality | 134 | 100% | 134 |
Archive description
FUNGAL MICROBIOTA
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN08741342 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Beijing |
| SAMN08741342 | location_locality | Beijing | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Beijing |
Sequencing
134 runs over 134 samples · mean 96.2 Mbp per run (median 80.3 Mbp, total 12.89 Gbp; 134 runs with a base count) · layout PAIRED 134 · platform ILLUMINA 134 · models Illumina HiSeq 2500 (134) · 0% of runs with a Sandpiper profile · first public 2022-03-21
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA439151.csv.gz (3.4 KB) · parquet (73.5 KB) — all 134 samples, every field with route and confidence · PRJNA439151_determinations.csv.gz (1.6 KB) — 268 evidence rows