Gut microbiome in osteoarthritis patients

Human gut microbiome (PRJCA023753)

This dataset includes 228 gut microbiome samples from patients with osteoarthritis. Sample location and participant ages are not specified, and the study design is listed as "other." machine-written summary

228 samples · 228 runs · Age unknown · 2026 · 10.79 Gbp / sample

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Sources

✓Sequence archive 684✓Abstract / description 456–Full text–Supplementary tables–External resources–User contribution–Human verified

Checked this project's papers and archive records yourself? Mark it human-verified.

what each source gave

✓ Sequence archive	684 sample values (collection date, subject id, timepoint)
✓ Abstract / description	456 sample values (health condition, health condition detail)
– Full text	no open-access full text linked
– Supplementary tables	no supplementary tables available (or none open access)
– External resources	not covered by the external resources we ingest
– User contribution	nothing uploaded yet · share metadata
– Human verified	not yet checked by a person · I checked this project — verify it

Samples at a glance

Age

unknown228

Condition

autoimmune_inflammatory228

Body site

primary228

Collected 2020–2021

Sequencing depth per sample · this project all projects

Sampling design and relatedness

longitudinal

60 of 60 people sampled more than once (228 samples; median 4, up to 4 per person) · follow-up median 4 mo (max 4 mo) · median interval between samples 31 d (time from collection dates).

Each row is one person (36 shown of 60); dots are samples at days since that person's first sample.

How longitudinal and relatedness information is derived

Community composition

No Sandpiper profile for this project's samples yet.

Field coverage

field	samples	coverage	R1	R4
age_category	0	0%
country	0	0%
health_condition	228	100%		228
subject_id	228	100%	228
collection_date	228	100%	228
health_condition_detail	228	100%		228
timepoint_label	228	100%	228

Details

Archive description

The gut microbiome of patients with osteoarthritis

How this project entered the registry

Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.75. Assay shotgun_dna.

host run.host_tax_id · “9606”
body site study.title · “Human gut microbiome”

Evidence examples (one per field × route)

sample	field	value	route	conf.	source	quote
SAMD01841323	collection_date	2020-12-01	R1	0.90	biosample.attribute:collection_date	2020-12-01
SAMD01841323	health_condition	autoimmune_inflammatory	R4	0.50	study.description	patients with osteoarthritis
SAMD01841323	health_condition_detail	Osteoarthritis	R4	0.50	study.description	patients with osteoarthritis
SAMD01841323	subject_id	GJC1	R1	0.70	sample.name_rule:sample_title	GJC1A (SAMC3421970)
SAMD01841323	timepoint_label	A	R1	0.70	sample.name_rule:sample_title	GJC1A (SAMC3421970)

Sequencing

228 runs over 228 samples · mean 10.90 Gbp per run (median 10.79 Gbp, total 2,485.73 Gbp; 228 runs with a base count) · layout PAIRED 228 · platform ILLUMINA 228 · models Illumina NovaSeq 6000 (228) · 0% of runs with a Sandpiper profile · first public 2026-06-02

Authors (0)

No author record.

Help complete this project

2 of the 4 core fields are below 50% coverage: age_category, country. Share metadata

Downloads

PRJDB41006.csv.gz (6.2 KB) · parquet (77.3 KB) — all 228 samples, every field with route and confidence · PRJDB41006_determinations.csv.gz (9.2 KB) — 1,140 evidence rows

Samples (228 · every field this project has values for · hover a cell for its source)

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