Small intestine microbiome/metabolome in ACLF, China
80 samples from Chongqing, China, characterizing small intestine microbiome and metabolome features in patients with acute-on-chronic liver failure (ACLF). machine-written summary
80 samples · 80 runs · CN · Age unknown · 2025 · 12.91 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 400 sample values (collection date, country, health condition, health condition detail, location locality) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 42 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 80 | 100% | 80 | |||
| health_condition | 80 | 100% | 80 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 80 | 100% | 80 | |||
| detailed_location | 80 | 100% | ||||
| health_condition_detail | 80 | 100% | 80 | |||
| location_locality | 80 | 100% | 80 |
Archive description
Microbiome and metabolome characteristics of the small intestine in patients with ACLF
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.75. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host run.scientific_name · “human gut metagenome”
- body site study.title · “microbiome and metabolome characteristics of the small intestine”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN51145475 | collection_date | 2022-02-03 | R1 | 0.90 | biosample.attribute:collection_date | 2022-02-03 |
| SAMN51145475 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Chongqing |
| SAMN51145475 | health_condition | liver_disease | R1 | 0.70 | sample.name_rule:alias | alias: ALD.RE.1 |
| SAMN51145475 | health_condition_detail | ACLF due to alcoholic liver disease (ALD) | R1 | 0.70 | sample.name_rule:alias | alias: ALD.RE.1 |
| SAMN51145475 | location_locality | Chongqing | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Chongqing |
Sequencing
80 runs over 80 samples · mean 10.84 Gbp per run (median 12.91 Gbp, total 867.48 Gbp; 80 runs with a base count) · layout PAIRED 80 · platform ILLUMINA 80 · models Illumina NovaSeq 6000 (80) · 95% of runs with a Sandpiper profile · first public 2025-09-05 – 2025-09-21
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA1317556.csv.gz (2.9 KB) · parquet (73.0 KB) — all 80 samples, every field with route and confidence · PRJNA1317556_determinations.csv.gz (4.3 KB) — 400 evidence rows