Gut flora in IgA nephropathy vs healthy controls
Case-control 16S rRNA gene sequencing study comparing intestinal flora between IgA Nephropathy patients and healthy controls; curated data cover 1 sample, with country unreported. machine-written summary
50 samples · 50 runs · Adult · 2020 · 0.21 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ○ Sequence archive | records read; no usable sample values |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 50 | 100% | ||||
| country | 0 | 0% | ||||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% |
Archive description
To compare the intestinal flora of Immunoglobulin A Nephropathy (IgAN) patients with that of healthy controls by high throughput 16S ribosomal RNA (rRNA) gene sequencing.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by sonnet_x2 with confidence 0.55. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “intestinal flora of Immunoglobulin A Nephropathy”
- life stage study.title · “Nephropathy (IgAN) patients versus healthy controls”
Sequencing
50 runs over 50 samples · mean 0.22 Gbp per run (median 0.21 Gbp, total 10.86 Gbp; 50 runs with a base count) · layout PAIRED 50 · platform ILLUMINA 50 · models Illumina HiSeq 4000 (50) · 0% of runs with a Sandpiper profile · first public 2020-07-26
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: country, health_condition, subject_id. Share metadata
Downloads
PRJNA647065.csv.gz (1.6 KB) · parquet (69.4 KB) — all 50 samples, every field with route and confidence · PRJNA647065_determinations.csv.gz (168 B) — 0 evidence rows