Human gut virome, cross-sectional sample set
115 gut virome samples, part of the Gut Virome Database project; location, age, and health status of sample sources not specified. Study design: cross-sectional. machine-written summary
115 samples · 115 runs · Age unknown · 2020 · 0.69 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ○ Sequence archive | records read; no usable sample values |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC7443397 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 22 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 0 | 0% | ||||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% |
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut. 2020 PMID 32841606 PMC7443397 own_data
Archive description
IBD virome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.53. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “IBD virome Raw sequence reads”
Sequencing
115 runs over 115 samples · mean 0.76 Gbp per run (median 0.69 Gbp, total 87.63 Gbp; 115 runs with a base count) · layout PAIRED 115 · platform ILLUMINA 115 · models Illumina HiSeq 2500 (115) · 57% of runs with a Sandpiper profile · first public 2020-02-05
Authors (6)
Gregory AC first · Zablocki O · Zayed AA · Howell A · Bolduc B · Sullivan MB last
Help complete this project
4 of the 4 core fields are below 50% coverage: age_category, country, health_condition, subject_id. Share metadata
Downloads
PRJNA552463.csv.gz (3.3 KB) · parquet (72.5 KB) — all 115 samples, every field with route and confidence · PRJNA552463_determinations.csv.gz (168 B) — 0 evidence rows