FMT for sleep disturbance in post-COVID syndrome, Hong Kong
116 gut metagenome samples from adults in Hong Kong, studying faecal microbiota transplantation as an intervention for sleep disturbance in post-acute COVID-19 syndrome. machine-written summary
116 samples · 116 runs · HK · Adult · 2024 · 7.51 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 464 sample values (collection date, country, latitude, longitude) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Faecal microbiota transplantation design randomized_controlled_trial · population other_disease · Faecal microbiota transplantation for sleep disturbance in post-COVID-19
“Faecal microbiota transplantation for sleep disturbance” — study.title (study level; per-sample arms are in the intervention column below)
longitudinal — not resolved
Genera, mean relative abundance over 106 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 116 | 100% | ||||
| country | 116 | 100% | 116 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 116 | 100% | 116 | |||
| latitude | 116 | 100% | 116 | |||
| longitude | 116 | 100% | 116 |
- Fecal Microbiota Transplantation for Sleep Disturbance in Post-acute COVID-19 Syndrome. 2024 PMID 38908733 own_data
Archive description
Faecal microbiota transplantation for sleep disturbance in post-acute COVID-19 syndrome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Faecal microbiota transplantation for”
- body site study.description · “Faecal microbiota transplantation for”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN39265932 | collection_date | 2023-10 | R1 | 0.90 | biosample.attribute:collection_date | 2023-10 |
| SAMN39265932 | country | HK | R1 | 0.90 | sample.attr.geo_loc_name | Hong Kong |
| SAMN39265932 | latitude | 22.3000 | R1 | 0.90 | biosample.attribute:lat_lon | 22.30 N 114.17 E |
| SAMN39265932 | longitude | 114.1700 | R1 | 0.90 | biosample.attribute:lat_lon | 22.30 N 114.17 E |
Sequencing
116 runs over 116 samples · mean 7.32 Gbp per run (median 7.51 Gbp, total 849.48 Gbp; 116 runs with a base count) · layout PAIRED 116 · platform ILLUMINA 116 · models Illumina NovaSeq 6000 (116) · 91% of runs with a Sandpiper profile · first public 2024-01-07
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJNA1056888.csv.gz (3.5 KB) · parquet (73.6 KB) — all 116 samples, every field with route and confidence · PRJNA1056888_determinations.csv.gz (2.5 KB) — 464 evidence rows