Gut metagenome in dyslipidemia, Seoul, South Korea
1,710 gut metagenome samples from Seoul, South Korea, examined in a cross-sectional study comparing dyslipidemia cases with controls, focusing on microbiota composition, metabolic pathways, and antibiotic resistance genes. machine-written summary
1,710 samples · 1,710 runs · KR · Age unknown · 2025 · 6.11 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 10,260 sample values (collection date, country, latitude, location locality, location region, longitude) |
| ✓ Abstract / description | 1,710 sample values (health condition detail) |
| ○ Full text | read; no usable statement or table · PMC12710354, PMC13055376 |
| ✓ Supplementary tables | 2,810 sample values (age, health condition, sex) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 1,700 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 42 | 2% | ||||
| country | 1,710 | 100% | 1,710 | |||
| health_condition | 1,384 | 81% | 1,384 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 1,710 | 100% | 1,710 | |||
| detailed_location | 1,710 | 100% | ||||
| health_condition_detail | 1,710 | 100% | 1,710 | |||
| latitude | 1,710 | 100% | 1,710 | |||
| location_locality | 1,710 | 100% | 1,710 | |||
| location_region | 1,710 | 100% | 1,710 | |||
| longitude | 1,710 | 100% | 1,710 | |||
| sex | 1,384 | 81% | 1,384 | |||
| age_at_collection_days | 42 | 2% | 42 |
- Metagenome-assembled genomes reveal microbial signatures and metabolic pathways linked to coronary artery disease. 2025 PMID 41196050 PMC12710354 own_data
- Gut microbial community structure, metabolic signature, and resistome in dyslipidemia: implications for cardiovascular disease management. 2026 PMID 41778788 PMC13055376 own_data
Archive description
Human gut metagenome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN45212064 | age_at_collection_days | 22646 | R2 | 0.85 | paper.supp.msystems.00954-25-s0002.xlsx[Table S2!age] | 62 |
| SAMN45212064 | collection_date | 2014-07 | R1 | 0.90 | biosample.attribute:collection_date | 2014-07 |
| SAMN45212064 | country | KR | R1 | 0.90 | sample.attr.geo_loc_name | South Korea:Seoul |
| SAMN45212078 | health_condition | healthy_control | R2 | 0.85 | paper.supp.spectrum.00971-25-s0001.xlsx[Table S21!Group] | Control |
| SAMN45212064 | health_condition_detail | mixed_case_control: 895 dyslipidemia patients vs 489 healthy controls | R4 | 0.40 | paper.abstract | 895 individuals with dyslipidemia and 489 controls |
| SAMN45212064 | latitude | 37.5700 | R1 | 0.90 | biosample.attribute:lat_lon | 37.57 N 126.97 E |
| SAMN45212064 | location_locality | Seoul | R1 | 0.85 | biosample.attribute:geo_loc_name | South Korea:Seoul |
| SAMN45212064 | location_region | Seoul | R1 | 0.60 | biosample.attribute:lat_lon | 37.57 N 126.97 E |
| SAMN45212064 | longitude | 126.9700 | R1 | 0.90 | biosample.attribute:lat_lon | 37.57 N 126.97 E |
| SAMN45212078 | sex | male | R2 | 0.85 | paper.supp.spectrum.00971-25-s0001.xlsx[Table S21!sex] | Male |
Sequencing
1,710 runs over 1,710 samples · mean 6.28 Gbp per run (median 6.11 Gbp, total 10,738.20 Gbp; 1,710 runs with a base count) · layout SINGLE 1,710 · platform ILLUMINA 1,710 · models Illumina NovaSeq 6000 (1,710) · 99% of runs with a Sandpiper profile · first public 2025-10-23 – 2025-11-23
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, subject_id. Share metadata
Downloads
PRJNA1195215.csv.gz (42.2 KB) · parquet (135.5 KB) — all 1,710 samples, every field with route and confidence · PRJNA1195215_determinations.csv.gz (82.5 KB) — 14,780 evidence rows