Gut metagenomes screened for Kawasaki disease pathogens
80 gut metagenome samples (mostly neonates and infants) analyzed for possible pathogens associated with Kawasaki disease; country, design, and health status details not specified. machine-written summary
80 samples · 80 runs · Infant / toddler · 2012 · 0.74 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 189 sample values (age, health condition, health condition detail, subject id, timepoint) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal
29 of 35 people sampled more than once (62 samples; median 2, up to 4 per person) · follow-up median 6 mo (max 6 mo) · median interval between samples 6 mo (time from age at collection). Schedule stated by the source: “Repeated sampling per subject across acute/distant phases and multiple days/months (day2-day6, 4month, 6month) based on sample_title tokens and timepoint_label diversity”.
Each row is one person (7 shown of 29); dots are samples at days since that person's first sample.
Genera, mean relative abundance over 51 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 30 | 38% | ||||
| country | 0 | 0% | ||||
| health_condition | 10 | 12% | 10 | |||
| subject_id | 80 | 100% | 80 | |||
| timepoint_label | 65 | 81% | 65 | |||
| age_at_collection_days | 24 | 30% | 24 | |||
| health_condition_detail | 10 | 12% | 10 |
- Complete genes may pass from food to human blood. 2013 PMID 23936105 PMC3728338 cites_accession
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of infant / toddler by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage verdict include”
- body site external_curation.infant_catalog · “infant triage verdict include (gut/stool scope)”
- life stage external_curation.infant_catalog · “infant triage verdict include (0-3 y scope)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD00011141 | age_at_collection_days | 4 | R1 | 0.85 | sample.title | day4 |
| SAMD00011142 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:TITLE | C4-feces |
| SAMD00011142 | health_condition_detail | C4-feces | R1 | 0.70 | sample.name_rule:TITLE | C4-feces |
| SAMD00002748 | subject_id | TYMC108 | R1 | 0.70 | sample.name_rule:TITLE | TYMC108-feces_Distant |
| SAMD00008983 | subject_id | P1-026 | R1 | 0.70 | sample.name_rule:st | P1-026A |
| SAMD00002748 | timepoint_label | Distant | R1 | 0.70 | sample.name_rule:TITLE | TYMC108-feces_Distant |
| SAMD00008984 | timepoint_label | 026D | R1 | 0.70 | sample.title | P1-026D |
Sequencing
80 runs over 80 samples · mean 1.43 Gbp per run (median 0.74 Gbp, total 114.75 Gbp; 80 runs with a base count) · layout SINGLE 80 · platform ILLUMINA 80 · models Illumina Genome Analyzer II (80) · 75% of runs with a Sandpiper profile · first public 2012-10-22 – 2015-10-22
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, country, health_condition. Share metadata
Downloads
PRJDA72415.csv.gz (3.3 KB) · parquet (73.4 KB) — all 80 samples, every field with route and confidence · PRJDA72415_determinations.csv.gz (3.0 KB) — 189 evidence rows