Human fecal metagenome from Hangzhou, Zhejiang, China
Metagenomic sequencing of 75 human fecal samples collected in Hangzhou, Zhejiang, China. No health condition, intervention, or study design details are specified in the available records. machine-written summary
75 samples · 75 runs · CN · Age unknown · 2025 · 10.65 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 525 sample values (collection date, country, latitude, location locality, location region, longitude, subject id) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal
27 of 48 people sampled more than once (54 samples; median 2, up to 2 per person) · follow-up median 4 mo (max 4 mo) · median interval between samples 4 mo (time from collection dates).
Each row is one person (16 shown of 27); dots are samples at days since that person's first sample.
Genera, mean relative abundance over 65 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 75 | 100% | 75 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 75 | 100% | 75 | |||
| collection_date | 75 | 100% | 75 | |||
| detailed_location | 75 | 100% | ||||
| latitude | 75 | 100% | 75 | |||
| location_locality | 75 | 100% | 75 | |||
| location_region | 75 | 100% | 75 | |||
| longitude | 75 | 100% | 75 |
Archive description
metagenomic sequencing of human gut fecals
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host study.title · “human fecal metagenome”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN48371973 | collection_date | 2023-07-06 | R1 | 0.90 | biosample.attribute:collection_date | 2023-07-06 |
| SAMN48371973 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: zhejiang, hangzhou |
| SAMN48371973 | latitude | 30.1833 | R1 | 0.90 | biosample.attribute:lat_lon | 30.1833 N 120.2500 E |
| SAMN48371973 | location_locality | Hangzhou | R1 | 0.85 | biosample.attribute:geo_loc_name | China: zhejiang, hangzhou |
| SAMN48371973 | location_region | Zhejiang | R1 | 0.85 | biosample.attribute:geo_loc_name | China: zhejiang, hangzhou |
| SAMN48371973 | longitude | 120.2500 | R1 | 0.90 | biosample.attribute:lat_lon | 30.1833 N 120.2500 E |
| SAMN48371973 | subject_id | RA-1 | R1 | 0.70 | sample.name_rule:alias | RA-1 |
Sequencing
75 runs over 75 samples · mean 10.86 Gbp per run (median 10.65 Gbp, total 814.31 Gbp; 75 runs with a base count) · layout PAIRED 75 · platform ILLUMINA 75 · models Illumina NovaSeq 6000 (75) · 87% of runs with a Sandpiper profile · first public 2025-06-09
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: age_category, health_condition. Share metadata
Downloads
PRJNA1259758.csv.gz (3.1 KB) · parquet (74.1 KB) — all 75 samples, every field with route and confidence · PRJNA1259758_determinations.csv.gz (5.0 KB) — 525 evidence rows