IBS Gut Metagenome in Adults, Seattle, USA
Shotgun metagenomic data from 56 adult samples collected in Seattle, USA, studying IBS (irritable bowel syndrome). machine-written summary
56 samples · 56 runs · US · Adult · 2021 · 11.14 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 280 sample values (country, latitude, location locality, location region, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 56 | 100% | ||||
| country | 56 | 100% | 56 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| detailed_location | 56 | 100% | ||||
| latitude | 56 | 100% | 56 | |||
| location_locality | 56 | 100% | 56 | |||
| location_region | 56 | 100% | 56 | |||
| longitude | 56 | 100% | 56 |
Archive description
IBS shotgun metagenomic data
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site external_curation.infant_catalog · “body_site_call gut”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN24043418 | country | US | R1 | 0.90 | sample.attr.geo_loc_name | USA: Seattle |
| SAMN24043418 | latitude | 47.6062 | R1 | 0.90 | biosample.attribute:lat_lon | 47.6062 N 122.3321 W |
| SAMN24043418 | location_locality | Seattle | R1 | 0.85 | biosample.attribute:geo_loc_name | USA: Seattle |
| SAMN24043418 | location_region | Washington | R1 | 0.60 | biosample.attribute:lat_lon | 47.6062 N 122.3321 W |
| SAMN24043418 | longitude | -122.3321 | R1 | 0.90 | biosample.attribute:lat_lon | 47.6062 N 122.3321 W |
Sequencing
56 runs over 56 samples · mean 11.12 Gbp per run (median 11.14 Gbp, total 622.44 Gbp; 56 runs with a base count) · layout PAIRED 56 · platform BGISEQ 56 · models BGISEQ-500 (56) · 0% of runs with a Sandpiper profile · first public 2021-12-17
Authors (0)
No author record.
Help complete this project
2 of the 4 core fields are below 50% coverage: health_condition, subject_id. Share metadata
Downloads
PRJNA788943.csv.gz (2.2 KB) · parquet (71.4 KB) — all 56 samples, every field with route and confidence · PRJNA788943_determinations.csv.gz (2.9 KB) — 280 evidence rows