Gut metagenomes in diabetes and cirrhosis, South Korea
149 gut metagenome samples from South Korea, studied with a case-control design to examine strain-level functional changes in gut commensals associated with diabetes and cirrhosis. machine-written summary
149 samples · 149 runs · KR · Age unknown · 2026 · 7.81 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 298 sample values (collection date, country) |
| ✓ Abstract / description | 149 sample values (health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet · share metadata |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 149 | 100% | 149 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 149 | 100% | 149 | |||
| health_condition_detail | 149 | 100% | 149 |
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN61595492 | collection_date | 2018 | R1 | 0.90 | biosample.attribute:collection_date | 2018 |
| SAMN61595492 | country | KR | R1 | 0.90 | sample.attr.geo_loc_name | South Korea |
| SAMN61595492 | health_condition_detail | mixed_case_control: diabetes and cirrhosis patients vs controls | R4 | 0.50 | study.title | patients with diabetes and cirrhosis |
Sequencing
149 runs over 149 samples · mean 8.49 Gbp per run (median 7.81 Gbp, total 1,265.62 Gbp; 149 runs with a base count) · layout PAIRED 149 · platform ILLUMINA 149 · models Illumina NovaSeq 6000 (149) · 0% of runs with a Sandpiper profile · first public 2026-07-16 – 2026-07-17
Authors (0)
No author record.
Help complete this project
3 of the 4 core fields are below 50% coverage: age_category, health_condition, subject_id. Share metadata
Downloads
PRJNA1422633.csv.gz (4.4 KB) · parquet (74.8 KB) — all 149 samples, every field with route and confidence · PRJNA1422633_determinations.csv.gz (2.5 KB) — 447 evidence rows