Gut DNA virome across six ethnicities, China
Shotgun metagenomics of fecal DNA virome from 930 catalog samples of healthy adults across six ethnicities and urban/rural settings in Hong Kong and Yunnan, China. machine-written summary
930 samples · 930 runs · CN, HK · Age unknown · 2021 · 6.90 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 930 sample values (country) |
| ✓ Abstract / description | 3,720 sample values (health condition, health condition detail, location region, subject id) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 930 | 100% | ||||
| country | 930 | 100% | 930 | |||
| health_condition | 930 | 100% | 930 | |||
| subject_id | 930 | 100% | 930 | |||
| detailed_location | 930 | 100% | ||||
| health_condition_detail | 930 | 100% | 930 | |||
| location_region | 930 | 100% | 930 |
- Human-Gut-DNA Virome Variations across Geography, Ethnicity, and Urbanization. 2020 PMID 32910902 own_data
Archive description
large-population fecal virome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by curator_audit with confidence 0.53. Assay shotgun_dna.
- host runs.scientific_name · “human gut metagenome (930)”
- host runs.isolation_source · “feces isolate (930)”
- body site runs.scientific_name · “human gut metagenome (930)”
- body site runs.isolation_source · “feces isolate (930)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN13252340 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Yunnan |
| SAMN13252340 | health_condition | healthy_control | R4 | 0.50 | paper.abstract | the fecal DNA virome of 930 healthy adult subjects from two regions in China |
| SAMN13252340 | health_condition_detail | healthy adult subjects | R4 | 0.50 | paper.abstract | the fecal DNA virome of 930 healthy adult subjects from two regions in China |
| SAMN13252340 | location_region | Yunnan | R4 | 0.50 | paper.abstract | 930 healthy adult subjects from two regions in China |
| SAMN13252340 | subject_id | SAMN13252340 | R4 | 0.60 | design.one_sample_per_subject:abstract | fecal DNA virome of 930 healthy adult subjects from two regions in China |
Sequencing
930 runs over 930 samples · mean 7.05 Gbp per run (median 6.90 Gbp, total 6,557.07 Gbp; 930 runs with a base count) · layout PAIRED 930 · platform ILLUMINA 930 · models Illumina NovaSeq 6000 (930) · 85% of runs with a Sandpiper profile · first public 2021-01-04
Authors (0)
No author record.
Downloads
PRJNA588514.csv.gz (22.0 KB) · parquet (108.4 KB) — all 930 samples, every field with route and confidence · PRJNA588514_determinations.csv.gz (22.7 KB) — 4,650 evidence rows