Viral Microbiome in Children Post-Allogeneic HCT
343 samples from children following allogeneic hematopoietic cell transplantation, studying the viral microbiome; no location or design details are provided in the sources. machine-written summary
343 samples · 343 runs · US · Child · 2025 · 1.06 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 748 sample values (age, country, health condition, health condition detail) |
| ✓ Abstract / description | 937 sample values (health condition, health condition detail, location site) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Other administered intervention (see intervention_detail) design observational_with_procedure · population transplant_or_immunocompromised · Allogeneic hematopoietic cell transplantation; samples observational, not an assigned trial intervention
“children who underwent allogeneic hematopoietic cell transplantation” — bioproject.description (study level; per-sample arms are in the intervention column below)
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 343 | 100% | ||||
| country | 343 | 100% | 343 | |||
| health_condition | 343 | 100% | 46 | 297 | ||
| subject_id | 0 | 0% | ||||
| detailed_location | 343 | 100% | ||||
| health_condition_detail | 343 | 100% | 46 | 297 | ||
| location_site | 343 | 100% | 343 | |||
| age_at_collection_days | 313 | 91% | 313 |
Archive description
343 stool samples from children who underwent allogeneic hematopoietic cell transplantation at St. Jude Children's Research Hospital.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by sonnet_x2 with confidence 0.78. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host study.description · “children who underwent allogeneic hematopoietic cell transplantation”
- body site study.description · “343 stool samples”
- life stage study.description · “children who underwent allogeneic”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN46743967 | age_at_collection_days | 3645.2 | R1 | 0.85 | biosample.attribute:Age_yr | 9.98 |
| SAMN46743967 | country | US | R1 | 0.85 | biosample.attribute:geo_loc_name | USA: Memphis |
| SAMN46744055 | health_condition | transplant_or_immunocompromised | R1 | 0.85 | biosample.attribute:Diagnosis | Inherited Immunodeficiency |
| SAMN46743967 | health_condition | transplant_or_immunocompromised | R4 | 0.50 | study.description | children who underwent allogeneic hematopoietic cell transplantation |
| SAMN46744055 | health_condition_detail | Inherited Immunodeficiency | R1 | 0.85 | biosample.attribute:Diagnosis | Inherited Immunodeficiency |
| SAMN46743967 | health_condition_detail | Children who underwent allogeneic hematopoietic cell transplantation | R4 | 0.50 | study.description | children who underwent allogeneic hematopoietic cell transplantation |
| SAMN46743967 | location_site | St. Jude Children's Research Hospital | R4 | 0.45 | ena.study_description | St. Jude Children's Research Hospital |
Sequencing
343 runs over 343 samples · mean 3.42 Gbp per run (median 1.06 Gbp, total 1,174.25 Gbp; 343 runs with a base count) · layout PAIRED 343 · platform ILLUMINA 343 · models Illumina NovaSeq 6000 (343) · 0% of runs with a Sandpiper profile · first public 2025-02-15
Authors (0)
No author record.
Downloads
PRJNA1221567.csv.gz (10.2 KB) · parquet (84.2 KB) — all 343 samples, every field with route and confidence · PRJNA1221567_determinations.csv.gz (13.0 KB) — 1,685 evidence rows