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IBD reference cohorts
Disease reference sets · collection id ibd-reference-cohorts
Landmark inflammatory bowel disease shotgun cohorts: HMP2/IBDMDB, the PRISM cohort (Franzosa 2019), the Broad longitudinal IBD stool study (Hall 2017) and the disease-adapted-lineage cohort of 2024.
Open in the sample explorer (3,783 samples)
5
studies with member samples
3,783
member samples in this release
Membership rule
| Studies | PRJNA398089, PRJNA389280, PRJNA400072, PRJNA385949, PRJNA993675 |
Composition
Age category
| adult | 1,972 |
| adolescent | 719 |
| unknown | 568 |
| child | 358 |
| elderly | 166 |
Country
| US | 3,718 |
| NL | 65 |
Health condition
| ibd_or_gi_disease IBD or GI disease (infant) | 1,496 |
| healthy_control Healthy / control | 890 |
| crohns_disease Crohn's disease | 703 |
| ulcerative_colitis Ulcerative colitis | 468 |
| ibd_unspecified IBD (unspecified) | 225 |
Member studies (5)
| Study | Title | Member samples | First public |
|---|---|---|---|
| PRJNA398089 | Longitudinal Multi’omics of the Human Microbiome in Inflammatory Bowel Disease | 2,041 | 2017 |
| PRJNA993675 | Discovery of disease-adapted bacterial lineages in inflammatory bowel diseases | 960 | 2024 |
| PRJNA389280 | Human gut metagenome and metatranscriptome in the inflammatory bowel disease (iHMP/HMP2) | 300 | 2017 |
| PRJNA385949 | Longitudinal Stool Study of patients with IBD and controls | 262 | 2017 |
| PRJNA400072 | Gut microbiome structure and metabolic activity in inflammatory bowel disease | 220 | 2018 |