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MetaHIT European gut metagenome cohorts
Benchmark and reference cohorts · collection id metahit
The MetaHIT consortium deposits underlying the first gut gene catalogue and the metagenomic-species work: Danish and Spanish adults (Qin 2010), Danish obese/lean adults (Le Chatelier 2013, Nielsen 2014) and the integrated gene catalogue samples (Li 2014).
Open in the sample explorer (1,072 samples)
4
studies with member samples
1,072
member samples in this release
Membership rule
| Studies | PRJEB2054, PRJEB4336, PRJEB1220, PRJEB5224 |
Single-subject MetaHIT BioProjects (PRJNA33049 … 'Human Gut Subject MH6 Metagenome', 1 sample each) exist in the catalog but are not listed here.
Composition
Age category
| adult | 782 |
| unknown | 260 |
| elderly | 29 |
| neonate | 1 |
Country
| DK | 663 |
| ES | 398 |
| CN | 11 |
Health condition
| healthy_control Healthy / control | 669 |
| ibd_unspecified IBD (unspecified) | 148 |
| type2_diabetes Type 2 diabetes / prediabetes | 79 |
| type1_diabetes Type 1 diabetes | 31 |
| obesity Obesity / overweight | 4 |
Member studies (4)
| Study | Title | Member samples | First public |
|---|---|---|---|
| PRJEB1220 | A method for identifying metagenomic species and variable genetic elements by exhaustive co-abundance binning | 396 | 2014 |
| PRJEB4336 | Richness of human gut microbiome correlates with metabolic markers | 292 | 2013 |
| PRJEB5224 | An integrated catalog of reference genes in the human gut microbiome | 260 | 2014 |
| PRJEB2054 | A human gut microbial gene catalog established by deep metagenomic sequencing | 124 | 2010 |