Body site unknown unknown_site
Human studies whose body site could not be determined from the archive record; the site-classification queue.
Membership rule (config/scope.yaml): unknown_site in body_sites OR body_sites empty. Memberships derive deterministically from host, body sites, life stages and assay; a study can belong to several scopes.
828
studies
57,717
runs
50,519
BioSamples
11,874
BioSamples with harvested attributes — site known 1 %, age 1 %, sex 1 %
7,945
runs with a Sandpiper profile (14 %)
823
classified · 5 pending
Open in the registry explorer (pre-filtered) All scopes
Body sites and life stages within the scope
Primary body site (body_site_primary)
| value | studies | runs |
|---|---|---|
| unknown_site | 828 | 57,717 |
Primary life stage (life_stage_primary)
| value | studies | runs |
|---|---|---|
| unknown_age | 715 | 54,021 |
| child | 53 | 1,068 |
| adult | 26 | 709 |
| neonate | 14 | 665 |
| infant | 6 | 415 |
| mixed_ages | 6 | 267 |
| elderly | 5 | 558 |
| adolescent | 3 | 14 |
Assay (assay)
| value | studies | runs |
|---|---|---|
| other | 375 | 23,913 |
| shotgun_dna | 231 | 14,512 |
| isolate_genome | 161 | 14,419 |
| unknown | 18 | 2,123 |
| rna | 16 | 298 |
| amplicon_misfiled | 11 | 1,563 |
| mixed | 9 | 492 |
| amplicon | 7 | 397 |
Classification stage (classification_stage)
| value | studies | runs |
|---|---|---|
| sonnet_x2 | 507 | 25,751 |
| opus_adjudicated | 303 | 29,857 |
| deterministic_rule | 13 | 312 |
| pending | 5 | 1,797 |
Largest studies by BioSamples (top 25)
| study | title | BioSamples | runs | sites | stages | assay | stage |
|---|---|---|---|---|---|---|---|
| PRJNA288601 ENA | CDC HAI-Seq Gram-negative bacteria | 6,693 | 6,698 | unknown_site | unknown_age | isolate_genome | opus_adjudicated |
| PRJEB14474 ENA | Bacterial colonization and succession in a newly opened hospital | 2,756 | 3,079 | unknown_site | unknown_age | other | opus_adjudicated |
| PRJNA302362 ENA | Mycobacterium tuberculosis Raw sequence reads | 1,822 | 1,822 | unknown_site | unknown_age | isolate_genome | opus_adjudicated |
| PRJEB40383 ENA | Drivers_of_antimicrobial_resistance_in_Uganda_and_Malawi_3 | 1,778 | 1,778 | unknown_site | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA1039243 ENA | Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis | 1,649 | 1,649 | unknown_site | unknown_age | unknown | pending |
| PRJEB13679 ENA | The Treatment-Naive Microbiome in New-Onset Crohn s Disease | 1,359 | 1,359 | unknown_site | unknown_age | other | opus_adjudicated |
| PRJEB53055 ENA | Genomic surveillance of Monkeypox virus in Portugal | 909 | 909 | unknown_site | unknown_age | other | sonnet_x2 |
| PRJNA1268329 ENA | The genetic landscape of a human cell reveals conserved topology and principles of genetic networks [RICH] | 775 | 775 | unknown_site | unknown_age | other | sonnet_x2 |
| PRJNA1268153 ENA | EBV whole genome sequencing from patients with nasopharyngeal carcinoma and healthy controls | 732 | 732 | unknown_site | unknown_age | isolate_genome | sonnet_x2 |
| PRJNA728968 ENA | Clinical metagenomic next-generation sequencing (mNGS) for diagnosis of pathogenic infections in human... | 718 | 718 | unknown_site | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA1268328 ENA | The genetic landscape of a human cell reveals conserved topology and principles of genetic networks [MIN] | 668 | 668 | unknown_site | unknown_age | other | sonnet_x2 |
| PRJEB11485 ENA | A Universal Microbial Clock for Estimating the Postmortem Interval Metcalf SHSU Feb 2012 exp | 635 | 678 | unknown_site | unknown_age | other | sonnet_x2 |
| PRJNA973096 ENA | Dengue virus Genome sequencing | 552 | 552 | unknown_site | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA1448054 ENA | Bacterial capture sequencing | 521 | 521 | unknown_site | unknown_age | other | sonnet_x2 |
| PRJEB54899 ENA | The Anglo-Saxon migration and formation of the Early English Gene pool | 479 | 479 | unknown_site | unknown_age | other | opus_adjudicated |
| PRJEB53597 ENA | RVI_Programme | 476 | 1,167 | unknown_site | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA893759 ENA | Application of metagenomic next-generation sequencing for perioperative pathogenic microorganism... | 458 | 458 | unknown_site | unknown_age | shotgun_dna | opus_adjudicated |
| PRJNA754263 ENA | Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak in Australia: a... | 456 | 456 | unknown_site | unknown_age | other | opus_adjudicated |
| PRJEB51408 ENA | Generating evidence on Resistant bacteria in the Aged Care Environment | 441 | 441 | unknown_site | elderly | shotgun_dna | opus_adjudicated |
| PRJEB61294 ENA | Viral, Bacterial and Fungal Metagenomic protocol | 434 | 434 | unknown_site | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA672955 ENA | Candida auris colonization on a ventilator ward of a long-term care facility Raw sequence reads | 417 | 894 | unknown_site | unknown_age | amplicon_misfiled | sonnet_x2 |
| PRJNA1179655 ENA | Respiratory Viruses | 406 | 406 | unknown_site | unknown_age | shotgun_dna | sonnet_x2 |
| PRJNA918392 ENA | Staphylococcus aureus Genome sequencing and assembly | 367 | 367 | unknown_site | unknown_age | isolate_genome | sonnet_x2 |
| PRJNA1137905 ENA | Measles Virus Sequencing - General Purpose Submissions and Surveillance | 366 | 366 | unknown_site | unknown_age | other | sonnet_x2 |
| PRJNA993449 ENA | Clinical Application and Evaluation of Metagenomic Next-Generation Sequencing in Patients with Suspected... | 363 | 363 | unknown_site | unknown_age | shotgun_dna | sonnet_x2 |
Counts are computed from data/registry_studies.parquet at build time (release R2026.25).