Gut metagenomes of ulcerative colitis patients in Japan
114 fecal samples from ulcerative colitis patients in Japan, studied in relation to antibiotic intervention; age and design details not specified. machine-written summary
114 samples · 114 runs · JP · Age unknown · 2026 · 0.16 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 456 sample values (collection date, country, subject id, timepoint) |
| ✓ Abstract / description | 456 sample values (antibiotic exposure, health condition, health condition detail, location region) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Antibiotic given as the study intervention (incl. eradication therapy design single_arm_before_after · population ulcerative_colitis · Antibiotic combination therapy for ulcerative colitis
“treated with antibiotic combination therapy” — bioproject.description (study level; per-sample arms are in the intervention column below)
longitudinal — not resolved
31 of 31 people sampled more than once (114 samples; median 4, up to 8 per person). Schedule stated by the source: “Sample names encode before/after status and a day offset per patient (e.g. before_-3, after_14, after_84, after_365); no fixed schedule text given.”.
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 114 | 100% | 114 | |||
| health_condition | 114 | 100% | 114 | |||
| subject_id | 114 | 100% | 114 | |||
| antibiotic_exposure | 114 | 100% | 114 | |||
| collection_date | 114 | 100% | 114 | |||
| detailed_location | 114 | 100% | ||||
| health_condition_detail | 114 | 100% | 114 | |||
| location_region | 114 | 100% | 114 | |||
| timepoint_label | 114 | 100% | 114 |
Archive description
This project is related to metagenomic analysis of fecal samples obtained from ulcerative colitis patient in Japan treated with antibiotic combination therapy.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.75. Assay shotgun_dna.
- host study.title · “obtained from ulcerative colitis patient in Japan”
- body site study.title · “fecal samples”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMD00523986 | antibiotic_exposure | yes | R4 | 0.50 | study.description | treated with antibiotic combination therapy |
| SAMD00523986 | collection_date | 2015 | R1 | 0.85 | biosample.attribute:collection_date | 2015 |
| SAMD00523986 | country | JP | R1 | 0.85 | biosample.attribute:geo_loc_name | Japan |
| SAMD00523986 | health_condition | ulcerative_colitis | R4 | 0.50 | study.title | fecal samples obtained from ulcerative colitis patient in Japan |
| SAMD00523986 | health_condition_detail | Ulcerative colitis patient(s) treated with antibiotic combination therapy | R4 | 0.50 | study.description | ulcerative colitis patient in Japan treated with antibiotic combination therapy |
| SAMD00523986 | location_region | Japan | R4 | 0.45 | ena.study_description | fecal samples obtained from ulcerative colitis patient in Japan |
| SAMD00523986 | subject_id | P-01 | R1 | 0.85 | biosample.attribute:host_subject_id | P-01 |
| SAMD00523986 | timepoint_label | before_0 | R1 | 0.70 | sample.name_rule:sample_name | P-01_1_before_0 |
Sequencing
114 runs over 114 samples · mean 0.25 Gbp per run (median 0.16 Gbp, total 28.42 Gbp; 114 runs with a base count) · layout SINGLE 114 · platform ILLUMINA 114 · models Illumina MiSeq (88), Illumina Genome Analyzer IIx (26) · 0% of runs with a Sandpiper profile · first public 2026-04-12
Authors (0)
No author record.
Downloads
PRJDB14272.csv.gz (3.7 KB) · parquet (74.6 KB) — all 114 samples, every field with route and confidence · PRJDB14272_determinations.csv.gz (7.5 KB) — 912 evidence rows