Gut microbiota-immune compatibility for FMT in IBD (Italy)
10 fecal microbiome samples from adults with IBD in Italy, used to test an ex vivo donor-recipient immune compatibility assay (GMLR) to guide fecal microbiota transplantation donor selection. machine-written summary
10 samples · 10 runs · IT · Adult · 2026 · 2.35 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 70 sample values (collection date, country, health condition, health condition detail, latitude, location region, longitude) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 10 sample values (location locality) · PMC13578986 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 10 | 100% | ||||
| country | 10 | 100% | 10 | |||
| health_condition | 10 | 100% | 10 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 10 | 100% | 10 | |||
| detailed_location | 10 | 100% | ||||
| health_condition_detail | 10 | 100% | 10 | |||
| latitude | 10 | 100% | 10 | |||
| location_locality | 10 | 100% | 10 | |||
| location_region | 10 | 100% | 10 | |||
| longitude | 10 | 100% | 10 |
- A functional immune-based platform for donor-recipient matching in faecal microbiota transplantation for inflammatory bowel disease. 2026 PMID 42705024 PMC13578986 own_data
Archive description
Gut Microbiota - Lymphocyte Reaction (GMLR): a practical tool to optimize fecal microbiota transplantation (FMT) donor-recipient compatibility in IBD
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Gut Microbiota - Lymphocyte”
- body site study.description · “Gut Microbiota - Lymphocyte”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA120421570 | collection_date | 2022-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2022-01-01 |
| SAMEA120421570 | country | IT | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | Italy |
| SAMEA120421570 | health_condition | ibd_unspecified | R1 | 0.85 | biosample.attribute:description | description: Human gut metagenome of a patient with IBD |
| SAMEA120421570 | health_condition_detail | Human gut metagenome of a patient with IBD | R1 | 0.85 | biosample.attribute:description | description: Human gut metagenome of a patient with IBD |
| SAMEA120421570 | latitude | 45.4643 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 45.46427 9.18951 |
| SAMEA120421570 | location_locality | Milan | R3 | 0.70 | paper.fulltext.methods | Ospedale Maggiore Policlinico (Milan, Italy) |
| SAMEA120421570 | location_region | Lombardy | R1 | 0.60 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 45.46427 9.18951 |
| SAMEA120421570 | longitude | 9.1895 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 45.46427 9.18951 |
Sequencing
10 runs over 10 samples · mean 2.33 Gbp per run (median 2.35 Gbp, total 23.28 Gbp; 10 runs with a base count) · layout PAIRED 10 · platform ILLUMINA 10 · models Illumina NovaSeq 6000 (10) · 0% of runs with a Sandpiper profile · first public 2026-06-10
Authors (12)
Amoroso C first · Strati F · Maragno P · Caridi B · Noviello D · Gilodi M · Muià M · Frazzini S · Perillo F · Vecchi M · Caprioli F · Facciotti F last
Downloads
PRJEB101484.csv.gz (1.2 KB) · parquet (70.2 KB) — all 10 samples, every field with route and confidence · PRJEB101484_determinations.csv.gz (1.2 KB) — 80 evidence rows