Healthy Danish controls, functional disorders study
107 fecal metagenomic samples from healthy adult control subjects in Denmark, collected as part of a case-control study of functional disorders. machine-written summary
107 samples · 160 runs · DK · Age unknown · 2022 · 2.80 Gbp / sample · cohort Alteration of Gut Microbiome in Patients With Schi
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 107 sample values (country) |
| ✓ Abstract / description | 107 sample values (health condition) |
| ○ Full text | read; no usable statement or table · PMC10140391, PMC9814178 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 107 | 100% | ||||
| country | 107 | 100% | 107 | |||
| health_condition | 107 | 100% | 107 | |||
| subject_id | 0 | 0% |
- The gut microbiota in multiple sclerosis varies with disease activity. 2023 PMID 36604748 PMC9814178 unsure
- Alteration of Gut Microbiome in Patients With Schizophrenia Indicates Links Between Bacterial Tyrosine Biosynthesis and Cognitive Dysfunction. 2023 PMID 37124355 PMC10140391 unsure
Archive description
Healthy danish metagenomic samples from Danish study of Functional Disorders included in study "Alteration of gut microbiome in patients with schizophrenia indicates links between bacterial tyrosine biosynthesis and cognitive dysfunction" referenced under PRJEB41217 accession number.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.72. Assay shotgun_dna.
- host run.scientific_name · “human gut metagenome”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA112189637 | country | DK | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | Denmark |
| SAMEA112189637 | health_condition | healthy_control | R4 | 0.50 | study.description | Healthy danish metagenomic samples |
Sequencing
160 runs over 107 samples · mean 1.93 Gbp per run (median 2.24 Gbp, total 309.24 Gbp; 160 runs with a base count) · layout SINGLE 160 · platform ION_TORRENT 160 · models Ion Torrent Proton (160) · 0% of runs with a Sandpiper profile · first public 2022-01-31 – 2022-12-04
Authors (33)
Thirion F first · Sellebjerg F · Fan Y · Lyu L · Hansen TH · Pons N · Levenez F · Quinquis B · Stankevic E · Søndergaard HB · Dantoft TM · Poulsen CS · Forslund SK · Vestergaard H · Hansen T · Brix S · Oturai A · Sørensen PS · Ehrlich SD · Pedersen O last · Speyer H · Nielsen T · Le Chatelier E · Fromentin S · Berland M · Plaza Oñate F · Galleron N · Markó L · Birkner T · Jørgensen T · Nordentoft M · Mors O · Benros ME
Downloads
PRJEB41787.csv.gz (3.3 KB) · parquet (72.8 KB) — all 107 samples, every field with route and confidence · PRJEB41787_determinations.csv.gz (1.2 KB) — 214 evidence rows