Gut metagenomes from UK twins discordant for anxiety
19 gut metagenome samples from twins in the United Kingdom discordant for anxiety, using a case-control design. machine-written summary
19 samples · 19 runs · GB · Age unknown · 2023 · 13.69 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 95 sample values (collection date, country, latitude, location region, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
twins — not resolved
Twins discordant for anxiety (19 samples); co-twin pairing and zygosity not in archive metadata.
Genera, mean relative abundance over 19 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 19 | 100% | 19 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 0 | 0% | ||||
| collection_date | 19 | 100% | 19 | |||
| detailed_location | 19 | 100% | ||||
| latitude | 19 | 100% | 19 | |||
| location_region | 19 | 100% | 19 | |||
| longitude | 19 | 100% | 19 |
Archive description
Gut metagenomes from twins discordant by anxiety.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host run.scientific_name · “human metagenome”
- body site study.title · “gut metagenomes from twins”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA9951529 | collection_date | 2008-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2008-01-01 |
| SAMEA9951529 | country | GB | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | United Kingdom |
| SAMEA9951529 | latitude | 51.5099 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 51.509865 -0.118092 |
| SAMEA9951529 | location_region | England | R1 | 0.60 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 51.509865 -0.118092 |
| SAMEA9951529 | longitude | -0.1181 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 51.509865 -0.118092 |
Sequencing
19 runs over 19 samples · mean 14.14 Gbp per run (median 13.69 Gbp, total 268.71 Gbp; 19 runs with a base count) · layout PAIRED 19 · platform ILLUMINA 19 · models Illumina HiSeq 2000 (19) · 100% of runs with a Sandpiper profile · first public 2023-08-30
Authors (0)
No author record.
Downloads
PRJEB47532.csv.gz (1.3 KB) · parquet (69.7 KB) — all 19 samples, every field with route and confidence · PRJEB47532_determinations.csv.gz (1.0 KB) — 95 evidence rows