Microbiota across glucose groups in Mongolian adults, China
Cross-sectional metagenomic study of 24 fecal samples from Mongolian adults in China, comparing gut microbiota and metabolic function among type 2 diabetes, prediabetes, and healthy groups. machine-written summary
24 samples · 24 runs · CN · Adult · 2022 · 3.45 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 48 sample values (health condition, health condition detail) |
| ✓ Abstract / description | 24 sample values (subject id) |
| ✓ Full text | 48 sample values (antibiotic exposure, location region) · PMC10105465 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| ✓ External resources | 24 sample values (country) · from GMrepo v3 |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 24 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 24 | 100% | ||||
| country | 24 | 100% | 24 | |||
| health_condition | 24 | 100% | 24 | |||
| subject_id | 24 | 100% | 24 | |||
| antibiotic_exposure | 24 | 100% | 24 | |||
| detailed_location | 24 | 100% | ||||
| health_condition_detail | 24 | 100% | 24 | |||
| location_region | 24 | 100% | 24 |
- Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China. 2023 PMID 37060052 PMC10105465 own_data
- Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China 2022 own_data
Archive description
We recruited 24 Mongolian volunteers,6 of which were T2D cases(sample T1-T6), 6 were prediabetes cases(sample P1-P6), and 12 were health cases(sample C1-C12). The metagenomic analysis of gut microbiota from the volunteers’ fecal samples was performed. We compared the microbial differences in the three groups, and analyzed the differences of the stool microbial function.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by sonnet_x2 with confidence 0.75. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens(24)”
- host study.description · “24 Mongolian volunteers”
- body site study.description · “gut microbiota from the volunteers' fecal samples”
- life stage study.title · “different fasting plasma glucose groups”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA110359324 | antibiotic_exposure | no | R3 | 0.70 | paper.body.methods | Have not taken any antibiotics for nearly a month |
| SAMEA110359324 | country | CN | R2 | 0.75 | external.gmrepo source | country: China |
| SAMEA110359324 | health_condition | type2_diabetes | R1 | 0.90 | biosample_attr | type 2 diabetes mellitus |
| SAMEA110359324 | health_condition_detail | diabetes mellitus type 2 associated cataract | R1 | 0.90 | sample.attr.clinical_information | diabetes mellitus type 2 associated cataract |
| SAMEA110359324 | location_region | Inner Mongolia | R3 | 0.70 | paper.body.methods | This study recruited Mongolian volunteers in Inner Mongolia of China |
| SAMEA110359324 | subject_id | SAMEA110359324 | R4 | 0.60 | design.one_sample_per_subject:abstract | 24 Mongolian volunteers that were divided into T2D (6 cases), PRET2D (6 cases) and Control group (12 cases) |
Sequencing
24 runs over 24 samples · mean 3.49 Gbp per run (median 3.45 Gbp, total 83.88 Gbp; 24 runs with a base count) · layout SINGLE 24 · platform ILLUMINA 24 · models Illumina NovaSeq 6000 (24) · 100% of runs with a Sandpiper profile · first public 2022-07-29
Authors (0)
No author record.
Downloads
PRJEB54728.csv.gz (1.5 KB) · parquet (70.4 KB) — all 24 samples, every field with route and confidence · PRJEB54728_determinations.csv.gz (1.9 KB) — 144 evidence rows