PREDICT 3 UK22A gut metagenome samples, adults, UK
12,349 samples from adults in the United Kingdom, part of the PREDICT 3 UK22A project; no health conditions, interventions, or study design details were provided in the curated facts. machine-written summary
12,353 samples · 12,353 runs · GB · Adult · 2024 · 4.38 Gbp / sample · cohort Gut micro-organisms associated with health, nutrit
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 24,702 sample values (collection date, country) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 12,353 sample values (subject id) · PMC11602726, PMC11726441, PMC12893911, PMC5435877 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 11,851 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 12,353 | 100% | ||||
| country | 12,353 | 100% | 12,353 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 12,353 | 100% | 12,353 | |||
| collection_date | 12,349 | 100% | 12,349 |
- 3D transoesophageal echocardiography in the TAVI sizing arena: should we do it and how do we do it? 2017 PMID 28302656 PMC5435877 own_data
- Coffee consumption is associated with intestinal Lawsonibacter asaccharolyticus abundance and prevalence across multiple cohorts. 2024 PMID 39558133 PMC11602726 unsure
- Gut microbiome signatures of vegan, vegetarian and omnivore diets and associated health outcomes across 21,561 individuals. 2025 PMID 39762435 PMC11726441 unsure
- Gut micro-organisms associated with health, nutrition and dietary interventions. 2026 PMID 41372407 PMC12893911 unsure
Archive description
PREDICT 3 UK22A
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site external_curation.infant_catalog · “body_site_call gut”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA117342962 | collection_date | 2022 | R1 | 0.90 | biosample.attribute:collection_date | 2022 |
| SAMEA117342962 | country | GB | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | United Kingdom |
| SAMEA117342962 | subject_id | SAMEA117342962 | R3 | 0.70 | design.one_sample_per_subject:fulltext | PREDICT3 UK22A (n = 12,353 participants from the UK aged 18–95 years |
Sequencing
12,353 runs over 12,353 samples · mean 4.51 Gbp per run (median 4.38 Gbp, total 55,664.15 Gbp; 12,353 runs with a base count) · layout PAIRED 12,353 · platform ILLUMINA 12,353 · models unspecified (12,353) · 96% of runs with a Sandpiper profile · first public 2024-12-02 – 2025-04-12
Authors (48)
Bleakley C first · Eskandari M · Monaghan M last · Manghi P first · Bhosle A · Wang K · Marconi R · Selma-Royo M · Ricci L · Asnicar F · Golzato D · Ma W · Hang D · Thompson KN · Franzosa EA · Nabinejad A · Tamburini S · Rimm EB · Garrett WS · Sun Q · Chan AT · Valles-Colomer M · Arumugam M · Bermingham KM · Giordano F · Davies R · Hadjigeorgiou G · Wolf J · Strowig T · Berry SE · Huttenhower C · Spector TD · Segata N · Song M last · Fackelmann G first · Carlino N · Heidrich V · Piccinno G · Piperni E · Arrè A · Bakker E · Creedon AC · Francis L · Capdevila Pujol J · Baldanzi G · Mladenovic K · Amati F · Ganesh S
Downloads
PRJEB75464.csv.gz (294.6 KB) · parquet (603.8 KB) — all 12,353 samples, every field with route and confidence · PRJEB75464_determinations.csv.gz (194.8 KB) — 37,055 evidence rows