BMT CTN 1801 gut microbiome in US adults
2631 metagenomic samples from adults in the USA, collected as part of the BMT CTN 1801 study; no specific health condition, intervention, or design detail is given beyond "other." machine-written summary
2,631 samples · 5,024 runs · US · Adult · 2026 · 4.36 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 10,524 sample values (collection date, country, latitude, longitude) |
| ✓ Abstract / description | 5,262 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 2,631 | 100% | ||||
| country | 2,631 | 100% | 2,631 | |||
| health_condition | 2,631 | 100% | 2,631 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 2,631 | 100% | 2,631 | |||
| health_condition_detail | 2,631 | 100% | 2,631 | |||
| latitude | 2,631 | 100% | 2,631 | |||
| longitude | 2,631 | 100% | 2,631 |
- Differential effects of two common GVHD prophylaxis regimens on the gut microbiome: Results from the BMT CTN 1801 study 2026 own_data
Archive description
Metagenomic sequencing data for the BMT CTN 1801 study.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site external_curation.infant_catalog · “body_site_call gut”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMEA120406147 | collection_date | 2019/2023 | R1 | 0.90 | biosample.attribute:collection_date | 2019/2023 |
| SAMEA120406147 | country | US | R1 | 0.90 | sample.attr.geographic_location_country_and_or_sea | USA |
| SAMEA120406147 | health_condition | transplant_or_immunocompromised | R4 | 0.50 | paper.abstract | Samples were obtained up to weekly up to day 84 post allo-HCT and at less frequent intervals thereafter, up to 2 years. |
| SAMEA120406147 | health_condition_detail | allogeneic hematopoietic cell transplantation (allo-HCT) recipients undergoing GVHD prophylaxis | R4 | 0.50 | paper.abstract | Samples were obtained up to weekly up to day 84 post allo-HCT and at less frequent intervals thereafter, up to 2 years. |
| SAMEA120406147 | latitude | 39.8333 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 39.833333 -98.583333 |
| SAMEA120406147 | longitude | -98.5833 | R1 | 0.90 | biosample.attribute:geographic_location_latitude+geographic_location_longitude | 39.833333 -98.583333 |
Sequencing
5,024 runs over 2,631 samples · mean 2.28 Gbp per run (median 2.75 Gbp, total 11,444.44 Gbp; 5,024 runs with a base count) · layout SINGLE 5,024 · platform ILLUMINA 5,024 · models Illumina NovaSeq 6000 (5,024) · 0% of runs with a Sandpiper profile · first public 2026-08-30
Authors (0)
No author record.
Downloads
PRJEB97686.csv.gz (58.8 KB) · parquet (165.2 KB) — all 2,631 samples, every field with route and confidence · PRJEB97686_determinations.csv.gz (80.1 KB) — 15,786 evidence rows