Parkinson's disease patients stool metagenome, Suwon, Korea
36 stool shotgun metagenome samples from adults in Suwon, Korea, with a neurological/psychiatric condition (Parkinson's disease), collected in a cross-sectional design. machine-written summary
36 samples · 36 runs · KR · Adult · 2023 · 5.95 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 108 sample values (collection date, country, location locality) |
| ○ Abstract / description | read; no usable statement |
| ○ Full text | read; no usable statement or table · PMC13021664 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| ✓ External resources | 72 sample values (health condition, health condition detail) · from curatedMetagenomicData 3 (cMD 3) |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 33 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 36 | 100% | ||||
| country | 36 | 100% | 36 | |||
| health_condition | 36 | 100% | 36 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 36 | 100% | 36 | |||
| detailed_location | 36 | 100% | ||||
| health_condition_detail | 36 | 100% | 36 | |||
| location_locality | 36 | 100% | 36 |
- Examination of shared gut microbiome signatures in aging and Parkinson's disease. 2026 PMID 41907847 PMC13021664 unsure
Archive description
Parkinson's disease patients stool shotgun metagenome
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Parkinson's disease patients stool shotgun metagenome”
- body site study.description · “Parkinson's disease patients stool shotgun metagenome”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN38338228 | collection_date | 2022-09-15 | R1 | 0.90 | biosample.attribute:collection_date | 2022-09-15 |
| SAMN38338228 | country | KR | R1 | 0.90 | sample.attr.geo_loc_name | Korea: Suwon |
| SAMN38338228 | health_condition | neurological_psychiatric | R2 | 0.75 | external.cmd source | disease: Parkinson Disease |
| SAMN38338228 | health_condition_detail | Parkinson Disease | R2 | 0.75 | external.cmd source | disease: Parkinson Disease |
| SAMN38338228 | location_locality | Suwon | R1 | 0.85 | biosample.attribute:geo_loc_name | Korea: Suwon |
Sequencing
36 runs over 36 samples · mean 6.07 Gbp per run (median 5.95 Gbp, total 218.47 Gbp; 36 runs with a base count) · layout PAIRED 36 · platform ILLUMINA 36 · models Illumina MiSeq (36) · 92% of runs with a Sandpiper profile · first public 2023-11-23
Downloads
PRJNA1043247.csv.gz (1.9 KB) · parquet (70.6 KB) — all 36 samples, every field with route and confidence · PRJNA1043247_determinations.csv.gz (2.2 KB) — 180 evidence rows