Gut microbiome in CRC vs healthy adults, Tehran, Iran
20 gut metagenome samples from Tehran, Iran, comparing colorectal cancer patients (10) and healthy controls (10) using whole genome shotgun sequencing in a case-control design. machine-written summary
20 samples · 20 runs · IR · Age unknown · 2024 · 0.20 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 120 sample values (collection date, country, health condition, health condition detail, location locality, location region) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 20 | 100% | 20 | |||
| health_condition | 20 | 100% | 20 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 20 | 100% | 20 | |||
| detailed_location | 20 | 100% | ||||
| health_condition_detail | 20 | 100% | 20 | |||
| location_locality | 20 | 100% | 20 | |||
| location_region | 20 | 100% | 20 |
Archive description
In this study, the gut microbiome of 10 patients with CRC and 10 healthy subjects was characterized by whole genome shotgun sequencing.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.80. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host study.description · “10 patients with CRC and 10 healthy subjects”
- body site study.title · “gut microbiome of CRC patients”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN38756521 | collection_date | 2022-01-01 | R1 | 0.90 | biosample.attribute:collection_date | 2022-01-01 |
| SAMN38756521 | country | IR | R1 | 0.90 | sample.attr.geo_loc_name | Iran: Tehran |
| SAMN38756521 | health_condition | colorectal_cancer | R1 | 0.70 | sample.name_rule:sample_alias | IRAN1234:ICRC1 |
| SAMN38756521 | health_condition_detail | ICRC | R1 | 0.70 | sample.name_rule:sample_alias | IRAN1234:ICRC1 |
| SAMN38756521 | location_locality | Tehran | R1 | 0.85 | biosample.attribute:geo_loc_name | Iran: Tehran |
| SAMN38756521 | location_region | Tehran | R1 | 0.85 | biosample.attribute:geo_loc_name | Iran: Tehran |
Sequencing
20 runs over 20 samples · mean 0.19 Gbp per run (median 0.20 Gbp, total 3.90 Gbp; 20 runs with a base count) · layout PAIRED 20 · platform ILLUMINA 20 · models Illumina MiniSeq (20) · 0% of runs with a Sandpiper profile · first public 2024-08-25
Authors (0)
No author record.
Downloads
PRJNA1050885.csv.gz (1.4 KB) · parquet (70.1 KB) — all 20 samples, every field with route and confidence · PRJNA1050885_determinations.csv.gz (1.6 KB) — 120 evidence rows