Gut metagenome of 330 adult faecal samples from Xi'an, China
Shotgun DNA-seq of 330 human faecal samples from adults in Xi'an, China. No health condition, intervention, or study design is specified in the available sources. machine-written summary
330 samples · 330 runs · CN · Adult · 2025 · 14.87 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 2,310 sample values (age, collection date, country, health condition, health condition detail, location locality, sex) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 320 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 330 | 100% | ||||
| country | 330 | 100% | 330 | |||
| health_condition | 330 | 100% | 330 | |||
| subject_id | 0 | 0% | ||||
| age_at_collection_days | 330 | 100% | 330 | |||
| collection_date | 330 | 100% | 330 | |||
| detailed_location | 330 | 100% | ||||
| health_condition_detail | 330 | 100% | 330 | |||
| location_locality | 330 | 100% | 330 | |||
| sex | 330 | 100% | 330 |
Archive description
Normal DNA-seq of human faeces
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult and elderly by sonnet_x2 with confidence 0.70. Assay shotgun_dna.
- host study.title · “Human faeces Raw sequence reads”
- body site study.description · “Normal DNA-seq of human faeces”
- life stage sample.attr.age · “59 (n=297/330)”
- life stage sample.attr.age · “64 (n=33/330)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN40244739 | age_at_collection_days | 23376.0 | R1 | 0.70 | sample.attr.age | 64 |
| SAMN40244739 | collection_date | 2021-09-01 | R1 | 0.90 | biosample.attribute:collection_date | 2021-09-01 |
| SAMN40244739 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:xian |
| SAMN40244739 | health_condition | other_disease | R1 | 0.85 | biosample.attribute:isolate | isolate: case |
| SAMN40244739 | health_condition_detail | case | R1 | 0.85 | biosample.attribute:isolate | isolate: case |
| SAMN40244739 | location_locality | Xi'an | R1 | 0.75 | biosample.attribute:geo_loc_name | China:xian |
| SAMN40244739 | sex | female | R1 | 0.90 | sample.attr.sex | female |
Sequencing
330 runs over 330 samples · mean 14.93 Gbp per run (median 14.87 Gbp, total 4,926.68 Gbp; 330 runs with a base count) · layout PAIRED 330 · platform ILLUMINA 330 · models Illumina NovaSeq 6000 (330) · 97% of runs with a Sandpiper profile · first public 2025-04-03 – 2025-04-27
Authors (0)
No author record.
Downloads
PRJNA1083321.csv.gz (9.1 KB) · parquet (82.5 KB) — all 330 samples, every field with route and confidence · PRJNA1083321_determinations.csv.gz (13.4 KB) — 2,310 evidence rows