Gut microbiota in children with CD vs healthy, Shanghai, China
32 samples from children in Shanghai, China, comparing gut microbiota in those with newly onset CD (celiac disease) versus healthy children, using a case-control design. machine-written summary
32 samples · 32 runs · CN · Child · 2025 · 0.31 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 224 sample values (collection date, country, health condition, health condition detail, latitude, location locality, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 32 | 100% | ||||
| country | 32 | 100% | 32 | |||
| health_condition | 32 | 100% | 32 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 32 | 100% | 32 | |||
| detailed_location | 32 | 100% | ||||
| health_condition_detail | 32 | 100% | 32 | |||
| latitude | 32 | 100% | 32 | |||
| location_locality | 32 | 100% | 32 | |||
| longitude | 32 | 100% | 32 |
Archive description
We aim to characterize alterations of gut microbiota in children with newly onset CD.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by deterministic_rule with confidence 0.90. Assay shotgun_dna.
- host run.host_tax_id · “host_tax_id 9606”
- body site study.title · “Gut microbiota profiles of”
- body site study.description · “characterize alterations of gut microbiota in children”
- life stage study.title · “profiles of CD children and healthy children”
- life stage study.description · “gut microbiota in children with newly onset”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN41088118 | collection_date | 2023-10-01 | R1 | 0.90 | biosample.attribute:collection_date | 2023-10-01 |
| SAMN41088118 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Shanghai |
| SAMN41088118 | health_condition | crohns_disease | R1 | 0.70 | sample.name_rule:library_names | CD1 |
| SAMN41088118 | health_condition_detail | CD | R1 | 0.70 | sample.name_rule:library_names | CD1 |
| SAMN41088118 | latitude | 31.0000 | R1 | 0.90 | biosample.attribute:lat_lon | 31 N 121 E |
| SAMN41088118 | location_locality | Shanghai | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Shanghai |
| SAMN41088118 | longitude | 121.0000 | R1 | 0.90 | biosample.attribute:lat_lon | 31 N 121 E |
Sequencing
32 runs over 32 samples · mean 0.31 Gbp per run (median 0.31 Gbp, total 9.91 Gbp; 32 runs with a base count) · layout SINGLE 32 · platform ILLUMINA 32 · models Illumina MiSeq (32) · 0% of runs with a Sandpiper profile · first public 2025-06-03 – 2025-06-23
Authors (0)
No author record.
Downloads
PRJNA1104804.csv.gz (1.6 KB) · parquet (70.6 KB) — all 32 samples, every field with route and confidence · PRJNA1104804_determinations.csv.gz (2.1 KB) — 224 evidence rows