SFB genome reconstruction from gut of Malian children
Case series using 1 sample to reconstruct metagenome-assembled genomes of a segmented filamentous bacterium (Human-SFB-ML) from the gut microbiota of children in Mali. machine-written summary
1 samples · 5 runs · ML · Child · 2026 · 6.11 Gbp / sample · cohort Segmented filamentous bacteria are worldwide human
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 1 sample values (subject id) |
| ✓ Abstract / description | 1 sample values (country) |
| ○ Full text | read; no usable statement or table · PMC13153320 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 1 | 100% | 1 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 1 | 100% | 1 |
- Segmented filamentous bacteria are worldwide human gut commensals. 2026 PMID 41786702 PMC13153320 own_data
Archive description
The goal of this study was to characterize a segmented filamentous bacterium (SFB) species identified in the gut microbiota of Malian children. Using a combination of Meta3C, RNA bait-mediated SFB genome capture, and metagenomic Illumina and Pacbio sequencing, we reconstructed metagenome-assembled genomes (MAGs) for the SFB species Human-SFB-ML from two children in order to investigate its genomic features and phylogenetic relationship to other SFB species.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child and infant / toddler by sonnet_x2 with confidence 0.57. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site study.title · “gut of Malian children”
- life stage study.title · “gut of Malian children”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN41134099 | country | ML | R4 | 0.50 | study.description | gut of Malian children |
| SAMN41134099 | subject_id | Human-SFB-ML-1 | R1 | 0.50 | biosample_attr | Human-SFB-ML-1 |
Sequencing
5 runs over 1 samples · mean 4.69 Gbp per run (median 6.06 Gbp, total 23.47 Gbp; 5 runs with a base count) · layout PAIRED 3, SINGLE 2 · platform ILLUMINA 3, PACBIO_SMRT 2 · models Illumina HiSeq 2500 (3), PacBio RS (2) · 60% of runs with a Sandpiper profile · first public 2026-01-06 – 2026-01-20
Authors (0)
No author record.
Downloads
PRJNA1106451.csv.gz (862 B) · parquet (68.5 KB) — all 1 samples, every field with route and confidence · PRJNA1106451_determinations.csv.gz (353 B) — 2 evidence rows