Fungal isolates from GI tract of organ donors, case-control
26 samples from the gastrointestinal tract of adult brain-dead and donation-after-circulatory-death organ donors, comparing fungal presence and load between donor types; case-control design. machine-written summary
26 samples · 26 runs · US · Age unknown · 2025 · 1.46 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 182 sample values (collection date, country, latitude, location locality, location region, longitude, subject id) |
| ○ Abstract / description | read; no usable statement |
| ✓ Full text | 26 sample values (location site) · PMC12323666 |
| ○ Supplementary tables | files read; no table could be matched to the samples |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
6 of 9 people sampled more than once (23 samples; median 4, up to 5 per person).
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 26 | 100% | ||||
| country | 26 | 100% | 26 | |||
| health_condition | 0 | 0% | ||||
| subject_id | 26 | 100% | 26 | |||
| collection_date | 26 | 100% | 26 | |||
| detailed_location | 26 | 100% | ||||
| latitude | 26 | 100% | 26 | |||
| location_locality | 26 | 100% | 26 | |||
| location_region | 26 | 100% | 26 | |||
| location_site | 26 | 100% | 26 | |||
| longitude | 26 | 100% | 26 |
- Increased fungal burden in the gastrointestinal tract of brain-dead organ donors. 2025 PMID 40530808 PMC12323666 own_data
Archive description
Fungal isolates from GI of brain-dead organ donors and donation after circulatory death donors (DCD).
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.55. Assay shotgun_dna.
- host study.title · “Fungi in GI of Organ Donors”
- body site study.description · “Fungal isolates from GI of brain-dead”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN44115006 | collection_date | 2021-02 | R1 | 0.90 | biosample.attribute:collection_date | 2021-02 |
| SAMN44115006 | country | US | R1 | 0.90 | sample.attr.geo_loc_name | USA: Houston, TX |
| SAMN44115006 | latitude | 29.7100 | R1 | 0.90 | biosample.attribute:lat_lon | 29.71 N 95.40 W |
| SAMN44115006 | location_locality | Houston | R1 | 0.85 | biosample.attribute:geo_loc_name | USA: Houston, TX |
| SAMN44115006 | location_region | Texas | R1 | 0.75 | biosample.attribute:geo_loc_name | USA: Houston, TX |
| SAMN44115006 | location_site | Texas Medical Center | R3 | 0.70 | paper.fulltext.methods | located in the Texas Medical Center |
| SAMN44115006 | longitude | -95.4000 | R1 | 0.90 | biosample.attribute:lat_lon | 29.71 N 95.40 W |
| SAMN44115006 | subject_id | Donor 1 | R1 | 0.85 | biosample.attribute:env_medium | Donor 1 |
Sequencing
26 runs over 26 samples · mean 1.62 Gbp per run (median 1.46 Gbp, total 42.17 Gbp; 26 runs with a base count) · layout PAIRED 26 · platform ILLUMINA 26 · models Illumina NovaSeq X Plus (26) · 100% of runs with a Sandpiper profile · first public 2025-03-30
Authors (14)
Nachman EJ first · Ardis CK · B Ardis AK · Nieto J · Bresson MM · Robertson CM · Seale MN · Villafuerte NM · Lyu Z · Preisner EC · Danhof HA · Di Rienzi SC · T Becker Y · Britton RA last
Downloads
PRJNA1170939.csv.gz (1.6 KB) · parquet (70.9 KB) — all 26 samples, every field with route and confidence · PRJNA1170939_determinations.csv.gz (2.0 KB) — 208 evidence rows