Gut microbiome in healthy vs T2D adults, India
Case-control study of 60 gut microbiome samples from healthy and type 2 diabetes cohorts (adult and elderly) across three Indian sites: Jharkhand, Tripura, and West Bengal. machine-written summary
60 samples · 60 runs · IN · Adult · 2026 · 0.31 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 596 sample values (age, collection date, country, health condition, health condition detail, latitude, location region, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 60 | 100% | ||||
| country | 60 | 100% | 60 | |||
| health_condition | 60 | 100% | 60 | |||
| subject_id | 60 | 100% | 60 | |||
| age_at_collection_days | 60 | 100% | 60 | |||
| collection_date | 60 | 100% | 60 | |||
| health_condition_detail | 60 | 100% | 60 | |||
| latitude | 60 | 100% | 60 | |||
| longitude | 60 | 100% | 60 | |||
| sex | 60 | 100% | 60 | |||
| detailed_location | 56 | 93% | ||||
| location_region | 56 | 93% | 56 |
Archive description
Comparison of the gut microbiome of healthy and T2D cohorts sequenced using Illumina MiniSeq platform. The datasets comprises of three different sites of India namely, Jharkhand, Tripura, and West Bengal.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Human gut microbiome of healthy”
- body site study.description · “Comparison of the gut microbiome of healthy”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN45122655 | age_at_collection_days | 13504.0 | R1 | 0.85 | sample.attr.host_age | 37 |
| SAMN45122655 | collection_date | 2023-10-04 | R1 | 0.90 | biosample.attribute:collection_date | 2023-10-04 |
| SAMN45122655 | country | IN | R1 | 0.90 | sample.attr.geo_loc_name | India |
| SAMN45122655 | health_condition | type2_diabetes | R1 | 0.70 | sample.name_rule:title | title: Diabetic |
| SAMN45122655 | health_condition_detail | Diabetic | R1 | 0.70 | sample.name_rule:title | title: Diabetic |
| SAMN45122655 | latitude | 23.9600 | R1 | 0.90 | biosample.attribute:lat_lon | 23.96 N 88.57 E |
| SAMN45122655 | location_region | West Bengal | R1 | 0.60 | biosample.attribute:lat_lon | 23.96 N 88.57 E |
| SAMN45122655 | longitude | 88.5700 | R1 | 0.90 | biosample.attribute:lat_lon | 23.96 N 88.57 E |
| SAMN45122655 | sex | male | R1 | 0.90 | sample.attr.host_sex | male |
| SAMN45122655 | subject_id | SAMN45122655 | R1 | 0.55 | design.one_sample_per_subject:archive | Comparison of the gut microbiome of healthy and T2D cohorts sequenced using Illumina MiniSeq platform. |
Sequencing
60 runs over 60 samples · mean 0.33 Gbp per run (median 0.31 Gbp, total 19.79 Gbp; 60 runs with a base count) · layout PAIRED 60 · platform ILLUMINA 60 · models Illumina MiniSeq (60) · 0% of runs with a Sandpiper profile · first public 2026-08-22
Authors (0)
No author record.
Downloads
PRJNA1192958.csv.gz (3.0 KB) · parquet (73.5 KB) — all 60 samples, every field with route and confidence · PRJNA1192958_determinations.csv.gz (5.9 KB) — 596 evidence rows