Faecal microbiome in IBS, cross-sectional, UK
109 faecal samples from volunteers in the United Kingdom, comparing healthy and unhealthy (IBS) individuals in a cross-sectional design. machine-written summary
109 samples · 109 runs · GB · Age unknown · 2025 · 1.34 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 804 sample values (collection date, country, health condition, health condition detail, latitude, longitude, subject id, timepoint) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
26 of 30 people sampled more than once (105 samples; median 4, up to 6 per person).
Genera, mean relative abundance over 106 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 109 | 100% | 109 | |||
| health_condition | 75 | 69% | 75 | |||
| subject_id | 109 | 100% | 109 | |||
| collection_date | 109 | 100% | 109 | |||
| latitude | 109 | 100% | 109 | |||
| longitude | 109 | 100% | 109 | |||
| timepoint_label | 109 | 100% | 109 | |||
| health_condition_detail | 75 | 69% | 75 |
Archive description
Comparison of faecal microbiome of healthy and unhealthy volunteers.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.80. Assay shotgun_dna.
- host study.title · “human patients with IBS”
- host run.host_tax_id · “9606”
- body site study.description · “faecal microbiome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN45868320 | collection_date | 2017-08-01 | R1 | 0.90 | biosample.attribute:collection_date | 2017-08-01 |
| SAMN45868320 | country | GB | R1 | 0.90 | sample.attr.geo_loc_name | United Kingdom |
| SAMN45868336 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:sample_alias | L-HV-11_S2 |
| SAMN45868336 | health_condition_detail | healthy_control (decoded from sample name L-HV-11_S2) | R1 | 0.70 | sample.name_rule:sample_alias | L-HV-11_S2 |
| SAMN45868320 | latitude | 55.3781 | R1 | 0.90 | biosample.attribute:lat_lon | 55.3781 N 3.4360 W |
| SAMN45868320 | longitude | -3.4360 | R1 | 0.90 | biosample.attribute:lat_lon | 55.3781 N 3.4360 W |
| SAMN45868320 | subject_id | 10 | R1 | 0.70 | sample.name_rule:sample_alias | L-FC-10_S17 |
| SAMN45868320 | timepoint_label | L | R1 | 0.70 | sample.name_rule:sample_alias | L-FC-10_S17 |
Sequencing
109 runs over 109 samples · mean 1.46 Gbp per run (median 1.34 Gbp, total 158.78 Gbp; 109 runs with a base count) · layout PAIRED 109 · platform ILLUMINA 109 · models Illumina NovaSeq X Plus (109) · 97% of runs with a Sandpiper profile · first public 2025-03-12 – 2025-03-23
Authors (0)
No author record.
Downloads
PRJNA1199203.csv.gz (4.0 KB) · parquet (74.9 KB) — all 109 samples, every field with route and confidence · PRJNA1199203_determinations.csv.gz (6.3 KB) — 804 evidence rows