Gut microbiome in liver disease patients in Seoul, Korea
Shotgun metagenomic sequencing of 176 fecal samples from liver disease patients in Seoul, Korea, to study gut microbiome changes associated with liver disease. machine-written summary
176 samples · 176 runs · KR · Age unknown · 2025 · 8.72 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 704 sample values (country, location region, subject id, timepoint) |
| ✓ Abstract / description | 176 sample values (health condition) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
54 of 86 people sampled more than once (144 samples; median 3, up to 3 per person). Schedule stated by the source: “Each subject sampled at up to three visits labeled V1, V2, V3; no calendar/day offsets stated”.
Genera, mean relative abundance over 167 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 176 | 100% | 176 | |||
| health_condition | 176 | 100% | 176 | |||
| subject_id | 176 | 100% | 176 | |||
| detailed_location | 176 | 100% | ||||
| location_region | 176 | 100% | 176 | |||
| timepoint_label | 176 | 100% | 176 |
Archive description
These samples were sequenced to identify changes in gut microbiome from a liver disease patients in Korean individuals.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.85. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- host study.description · “liver disease patients in Korean individuals”
- body site study.title · “fecal samples”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN46982776 | country | KR | R1 | 0.90 | sample.attr.geo_loc_name | Korea: Seoul |
| SAMN46982776 | health_condition | liver_disease | R4 | 0.50 | study.description | liver disease patients in Korean individuals |
| SAMN46982776 | location_region | Seoul | R1 | 0.85 | biosample.attribute:geo_loc_name | Korea: Seoul |
| SAMN46982776 | subject_id | KF001 | R1 | 0.70 | sample.name_rule:alias | alias: KF001-V1 |
| SAMN46982776 | timepoint_label | V1 | R1 | 0.70 | sample.name_rule:alias | alias: KF001-V1 |
Sequencing
176 runs over 176 samples · mean 13.01 Gbp per run (median 8.72 Gbp, total 2,289.30 Gbp; 176 runs with a base count) · layout PAIRED 176 · platform ILLUMINA 176 · models Illumina NovaSeq 6000 (176) · 95% of runs with a Sandpiper profile · first public 2025-03-09
Authors (0)
No author record.
Downloads
PRJNA1227423.csv.gz (5.1 KB) · parquet (75.6 KB) — all 176 samples, every field with route and confidence · PRJNA1227423_determinations.csv.gz (8.0 KB) — 880 evidence rows