Fecal metagenome, keloid vs control, Beijing, China
Case-control fecal metagenome study of 2 samples from adults in Beijing, China, comparing keloid patients and control patients. machine-written summary
2 samples · 2 runs · CN · Age unknown · 2025 · 3.28 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 16 sample values (age, collection date, country, health condition, health condition detail, location locality, sex, subject id) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 2 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 2 | 100% | ||||
| country | 2 | 100% | 2 | |||
| health_condition | 2 | 100% | 2 | |||
| subject_id | 2 | 100% | 2 | |||
| age_at_collection_days | 2 | 100% | 2 | |||
| collection_date | 2 | 100% | 2 | |||
| detailed_location | 2 | 100% | ||||
| health_condition_detail | 2 | 100% | 2 | |||
| location_locality | 2 | 100% | 2 | |||
| sex | 2 | 100% | 2 |
Archive description
Fecal metagenome of keloid patients and control patients
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.60. Assay shotgun_dna.
- host run.scientific_name · “Homo sapiens”
- body site study.description · “Fecal metagenome of keloid patients”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN47177980 | age_at_collection_days | 7305.0 | R1 | 0.85 | sample.attr.age | 20 |
| SAMN47177980 | collection_date | 2022-11 | R1 | 0.90 | biosample.attribute:collection_date | 2022-11 |
| SAMN47177980 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Beijing |
| SAMN47177980 | health_condition | other_disease | R1 | 0.85 | biosample.attribute:isolate | keloid patient |
| SAMN47177980 | health_condition_detail | keloid patient | R1 | 0.85 | biosample.attribute:isolate | keloid patient |
| SAMN47177980 | location_locality | Beijing | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Beijing |
| SAMN47177980 | sex | male | R1 | 0.90 | sample.attr.sex | male |
| SAMN47177980 | subject_id | SAMN47177980 | R1 | 0.55 | design.one_sample_per_subject:archive | age=20; sex=male; isolate=keloid patient |
Sequencing
2 runs over 2 samples · mean 3.28 Gbp per run (median 3.28 Gbp, total 6.57 Gbp; 2 runs with a base count) · layout SINGLE 2 · platform ILLUMINA 2 · models Illumina NovaSeq 6000 (2) · 100% of runs with a Sandpiper profile · first public 2025-04-27
Authors (0)
No author record.
Downloads
PRJNA1230534.csv.gz (969 B) · parquet (70.0 KB) — all 2 samples, every field with route and confidence · PRJNA1230534_determinations.csv.gz (891 B) — 16 evidence rows