Fecal Microbiota in Adults on Oral Antibiotics, Columbus, USA
Intervention study of 3 fecal samples from adult patients with other infection taking oral antibiotics, collected in Columbus, USA. machine-written summary
3 samples · 3 runs · US · Adult · 2025 · 4.36 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 42 sample values (age, antibiotic exposure, collection date, country, health condition, health condition detail, intervention, latitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention · arms resolved
1 people have samples in more than one arm.
design single_arm_before_after
longitudinal
1 of 1 people sampled more than once (3 samples; median 3, up to 3 per person) · follow-up median 9 d (max 9 d) · median interval between samples 4 d (time from collection dates). Schedule stated by the source: “One subject sampled 3 times: baseline (pre-drug), 3 days post-drug, and 7 days post-drug (oral azithromycin).”.
Each row is one person (1 shown); dots are samples at days since that person's first sample.
Genera, mean relative abundance over 3 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 3 | 100% | ||||
| country | 3 | 100% | 3 | |||
| health_condition | 3 | 100% | 3 | |||
| subject_id | 3 | 100% | 3 | |||
| age_at_collection_days | 3 | 100% | 3 | |||
| antibiotic_exposure | 3 | 100% | 3 | |||
| collection_date | 3 | 100% | 3 | |||
| detailed_location | 3 | 100% | ||||
| health_condition_detail | 3 | 100% | 3 | |||
| intervention | 3 | 100% | 3 | |||
| latitude | 3 | 100% | 3 | |||
| location_locality | 3 | 100% | 3 | |||
| location_region | 3 | 100% | 3 | |||
| longitude | 3 | 100% | 3 | |||
| sex | 3 | 100% | 3 | |||
| timepoint_label | 3 | 100% | 3 |
Archive description
Fecal microbiota high throughput sequencing data of human patients taking oral antibiotics.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by sonnet_x2 with confidence 0.75. Assay shotgun_dna.
- host study.description · “human patients taking oral antibiotics”
- host run.host_tax_id · “9606”
- body site study.description · “Fecal microbiota high throughput sequencing”
- body site run.scientific_name · “human gut metagenome”
- life stage sample.attr.host_age · “25 to 30 (n=3/3)”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN47555863 | age_at_collection_days | 9958.0 | R1 | 0.85 | sample.attr.host_age | 25 to 30 |
| SAMN47555863 | antibiotic_exposure | no | R1 | 0.70 | sample.name_rule:title | Baseline_Shotgun_16S |
| SAMN47555863 | collection_date | 2021-12-09 | R1 | 0.90 | biosample.attribute:collection_date | 2021-12-09 |
| SAMN47555863 | country | US | R1 | 0.90 | sample.attr.geo_loc_name | USA: Columbus |
| SAMN47555863 | health_condition | other_infection | R1 | 0.85 | biosample_attr | urogenital infection |
| SAMN47555863 | health_condition_detail | urogenital infection | R1 | 0.90 | sample.attr.host_disease | urogenital infection |
| SAMN47555863 | intervention | no_intervention | R1 | 0.70 | sample.name_rule:title | Baseline_Shotgun_16S |
| SAMN47555863 | latitude | 40.0500 | R1 | 0.90 | biosample.attribute:lat_lon | 40.05 N 83.05 W |
| SAMN47555863 | location_locality | Columbus | R1 | 0.85 | biosample.attribute:geo_loc_name | USA: Columbus |
| SAMN47555863 | location_region | Ohio | R1 | 0.60 | biosample.attribute:lat_lon | 40.05 N 83.05 W |
| SAMN47555863 | longitude | -83.0500 | R1 | 0.90 | biosample.attribute:lat_lon | 40.05 N 83.05 W |
| SAMN47555863 | sex | female | R1 | 0.90 | sample.attr.host_sex | female |
| SAMN47555863 | subject_id | C | R1 | 0.85 | sample.attr.host_subject_id | C |
| SAMN47555863 | timepoint_label | Baseline_Shotgun_16S | R1 | 0.70 | sample.name_rule:title | Baseline_Shotgun_16S |
Sequencing
3 runs over 3 samples · mean 4.28 Gbp per run (median 4.36 Gbp, total 12.85 Gbp; 3 runs with a base count) · layout PAIRED 3 · platform ILLUMINA 3 · models NextSeq 2000 (3) · 100% of runs with a Sandpiper profile · first public 2025-09-01
Authors (0)
No author record.
Downloads
PRJNA1241450.csv.gz (1.0 KB) · parquet (71.3 KB) — all 3 samples, every field with route and confidence · PRJNA1241450_determinations.csv.gz (1.2 KB) — 42 evidence rows