Pediatric IBD gut microbiome in Cincinnati, Ohio
148 gut microbiome samples from children with inflammatory bowel disease (unspecified type) in Cincinnati, Ohio, USA. machine-written summary
148 samples · 148 runs · US · Child · 2025 · 4.96 Gbp / sample
One study deposited as 2 BioProjects (284 catalog samples together): PRJNA1249606 · PRJNA1249971 · show together
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 888 sample values (collection date, country, latitude, location locality, location region, longitude) |
| ✓ Abstract / description | 296 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 145 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 148 | 100% | ||||
| country | 148 | 100% | 148 | |||
| health_condition | 148 | 100% | 148 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 148 | 100% | 148 | |||
| detailed_location | 148 | 100% | ||||
| health_condition_detail | 148 | 100% | 148 | |||
| latitude | 148 | 100% | 148 | |||
| location_locality | 148 | 100% | 148 | |||
| location_region | 148 | 100% | 148 | |||
| longitude | 148 | 100% | 148 |
Archive description
Microbiome in Pediatric IBD
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of child by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_unknown_no_evidence”
- body site external_curation.infant_catalog · “body_site_call stool”
- life stage study.title · “Microbiome in pediatric inflammatory bowel disease”
- life stage study.description · “Microbiome in Pediatric IBD”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN47926046 | collection_date | 2017-07-24 | R1 | 0.90 | biosample.attribute:collection_date | 2017-07-24 |
| SAMN47926046 | country | US | R1 | 0.90 | sample.attr.geo_loc_name | USA: Ohio, Cincinnati |
| SAMN47926046 | health_condition | ibd_unspecified | R4 | 0.50 | study.title | pediatric inflammatory bowel disease |
| SAMN47926046 | health_condition_detail | Inflammatory bowel disease in pediatric population | R4 | 0.50 | study.title | pediatric inflammatory bowel disease |
| SAMN47926046 | latitude | 39.1000 | R1 | 0.90 | biosample.attribute:lat_lon | 39.10 N 84.51 W |
| SAMN47926046 | location_locality | Cincinnati | R1 | 0.85 | biosample.attribute:geo_loc_name | USA: Ohio, Cincinnati |
| SAMN47926046 | location_region | Ohio | R1 | 0.85 | biosample.attribute:geo_loc_name | USA: Ohio, Cincinnati |
| SAMN47926046 | longitude | -84.5100 | R1 | 0.90 | biosample.attribute:lat_lon | 39.10 N 84.51 W |
Sequencing
148 runs over 148 samples · mean 5.76 Gbp per run (median 4.96 Gbp, total 853.03 Gbp; 148 runs with a base count) · layout PAIRED 148 · platform ILLUMINA 148 · models NextSeq 500 (148) · 98% of runs with a Sandpiper profile · first public 2025-04-14 – 2025-04-20
Authors (0)
No author record.
Downloads
PRJNA1249971.csv.gz (4.8 KB) · parquet (76.5 KB) — all 148 samples, every field with route and confidence · PRJNA1249971_determinations.csv.gz (7.4 KB) — 1,184 evidence rows