Gut microbiome in healthy vs T2D adults, Nagaland, India
Case-control study of 34 gut microbiome samples from adult residents of Nagaland, India, comparing healthy controls (15) and type 2 diabetes (10) using Illumina MiniSeq sequencing. machine-written summary
34 samples · 34 runs · IN · Adult · 2025 · 75.9 Mbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 220 sample values (collection date, country, health condition, health condition detail, latitude, location region, longitude, subject id) |
| ✓ Abstract / description | 9 sample values (health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal — not resolved
3 of 22 people sampled more than once (6 samples; median 2, up to 2 per person).
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 34 | 100% | ||||
| country | 34 | 100% | 34 | |||
| health_condition | 25 | 74% | 25 | |||
| subject_id | 25 | 74% | 25 | |||
| detailed_location | 34 | 100% | ||||
| health_condition_detail | 34 | 100% | 25 | 9 | ||
| latitude | 34 | 100% | 34 | |||
| location_region | 34 | 100% | 34 | |||
| longitude | 34 | 100% | 34 | |||
| collection_date | 9 | 26% | 9 |
Archive description
Comparison of the gut microbiome of healthy and T2D cohorts sequenced using Illumina MiniSeq platform. The datasets comprises of data from the Indian state of Nagaland.
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by sonnet_x2 with confidence 0.65. Assay shotgun_dna.
- host study.title · “Human gut microbiome of Healthy and T2D individuals”
- body site study.title · “Human gut microbiome”
- life stage study.description · “Comparison of the gut microbiome of healthy and T2D cohorts”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN50333028 | collection_date | 2025-01-08 | R1 | 0.90 | biosample.attribute:collection_date | 2025-01-08 |
| SAMN48326202 | country | IN | R1 | 0.90 | sample.attr.geo_loc_name | India: Nagaland |
| SAMN48326202 | health_condition | healthy_control | R1 | 0.90 | biosample_attr | Healthy |
| SAMN48326202 | health_condition_detail | Healthy | R1 | 0.90 | sample.attr.health_status | Healthy |
| SAMN50333028 | health_condition_detail | mixed_case_control: healthy controls vs type 2 diabetes patients | R4 | 0.40 | study.title | Healthy and T2D individuals |
| SAMN48326202 | latitude | 25.9053 | R1 | 0.90 | biosample.attribute:lat_lon | 25.90527154 N 93.71925592 E |
| SAMN48326202 | location_region | Nagaland | R1 | 0.85 | biosample.attribute:geo_loc_name | India: Nagaland |
| SAMN48326202 | longitude | 93.7193 | R1 | 0.90 | biosample.attribute:lat_lon | 25.90527154 N 93.71925592 E |
| SAMN48326202 | subject_id | SS1N | R1 | 0.70 | sample.name_rule:library_name | SS1N |
Sequencing
34 runs over 34 samples · mean 80.4 Mbp per run (median 75.9 Mbp, total 2.74 Gbp; 34 runs with a base count) · layout PAIRED 25, SINGLE 9 · platform ILLUMINA 34 · models Illumina MiniSeq (34) · 0% of runs with a Sandpiper profile · first public 2025-05-05 – 2025-08-09
Authors (0)
No author record.
Downloads
PRJNA1258603.csv.gz (1.8 KB) · parquet (71.4 KB) — all 34 samples, every field with route and confidence · PRJNA1258603_determinations.csv.gz (2.4 KB) — 229 evidence rows