Gut microbiome in human liver disease, Chongqing, China
25 gut metagenome samples from Chongqing, China, studying the gut microbiome in human liver diseases. Specific condition, age distribution, and study design details are not specified in the available sources. machine-written summary
25 samples · 25 runs · CN · Age unknown · 2025 · 6.71 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 121 sample values (collection date, country, health condition, health condition detail, location locality) |
| ○ Abstract / description | read; no usable statement |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 8 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 25 | 100% | 25 | |||
| health_condition | 23 | 92% | 23 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 25 | 100% | 25 | |||
| detailed_location | 25 | 100% | ||||
| location_locality | 25 | 100% | 25 | |||
| health_condition_detail | 23 | 92% | 23 |
Archive description
Study of the gut microbiome's metagenome in human liver diseases
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by sonnet_x2 with confidence 0.80. Assay shotgun_dna.
- host run.host_tax_id · “9606”
- body site run.scientific_name · “human gut metagenome”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN51835050 | collection_date | 2021-03-21 | R1 | 0.90 | biosample.attribute:collection_date | 2021-03-21 |
| SAMN51835050 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China:Chongqing |
| SAMN51835050 | health_condition | liver_disease | R1 | 0.70 | sample.name_rule:alias | AIH_G4 |
| SAMN51835050 | health_condition_detail | AIH | R1 | 0.70 | sample.name_rule:alias | AIH_G4 |
| SAMN51835050 | location_locality | Chongqing | R1 | 0.85 | biosample.attribute:geo_loc_name | China:Chongqing |
Sequencing
25 runs over 25 samples · mean 6.84 Gbp per run (median 6.71 Gbp, total 170.99 Gbp; 25 runs with a base count) · layout PAIRED 25 · platform ILLUMINA 25 · models Illumina NovaSeq 6000 (25) · 100% of runs with a Sandpiper profile · first public 2025-09-26
Authors (0)
No author record.
Downloads
PRJNA1334189.csv.gz (1.6 KB) · parquet (70.2 KB) — all 25 samples, every field with route and confidence · PRJNA1334189_determinations.csv.gz (1.6 KB) — 121 evidence rows