Gut virome in ulcerative colitis vs healthy adults
VLP-enriched metagenomic sequencing of 73 fecal samples from adults, comparing ulcerative colitis patients and healthy controls in a case-control design. machine-written summary
73 samples · 73 runs · KR · Adult · 2026 · 11.45 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 584 sample values (collection date, country, health condition, health condition detail, latitude, location locality, location region, longitude) |
| – Abstract / description | no abstract or project description |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
Genera, mean relative abundance over 68 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 73 | 100% | ||||
| country | 73 | 100% | 73 | |||
| health_condition | 73 | 100% | 73 | |||
| subject_id | 0 | 0% | ||||
| collection_date | 73 | 100% | 73 | |||
| detailed_location | 73 | 100% | ||||
| health_condition_detail | 73 | 100% | 73 | |||
| latitude | 73 | 100% | 73 | |||
| location_locality | 73 | 100% | 73 | |||
| location_region | 73 | 100% | 73 | |||
| longitude | 73 | 100% | 73 |
Archive description
This project performed VLP (virus-like particle)-enriched metagenomic sequencing of fecal samples from patients with ulcerative colitis and healthy controls
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site study.title · “Human gut virome in ulcerative”
- body site study.description · “metagenomic sequencing of fecal samples from patients”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN53502144 | collection_date | 2022-09-21 | R1 | 0.90 | biosample.attribute:collection_date | 2022-09-21 |
| SAMN53502144 | country | KR | R1 | 0.90 | sample.attr.geo_loc_name | South Korea: Seoul |
| SAMN53502144 | health_condition | healthy_control | R1 | 0.70 | sample.name_rule:id | N-094 |
| SAMN53502144 | health_condition_detail | N | R1 | 0.70 | sample.name_rule:id | N-094 |
| SAMN53502144 | latitude | 37.5625 | R1 | 0.90 | biosample.attribute:lat_lon | 37.562499 N 126.940858 E |
| SAMN53502144 | location_locality | Seoul | R1 | 0.85 | biosample.attribute:geo_loc_name | South Korea: Seoul |
| SAMN53502144 | location_region | Seoul | R1 | 0.60 | biosample.attribute:lat_lon | 37.562499 N 126.940858 E |
| SAMN53502144 | longitude | 126.9409 | R1 | 0.90 | biosample.attribute:lat_lon | 37.562499 N 126.940858 E |
Sequencing
73 runs over 73 samples · mean 12.68 Gbp per run (median 11.45 Gbp, total 925.92 Gbp; 73 runs with a base count) · layout PAIRED 73 · platform ILLUMINA 73 · models Illumina NovaSeq 6000 (73) · 93% of runs with a Sandpiper profile · first public 2026-01-23
Authors (0)
No author record.
Downloads
PRJNA1371390.csv.gz (2.9 KB) · parquet (73.4 KB) — all 73 samples, every field with route and confidence · PRJNA1371390_determinations.csv.gz (4.9 KB) — 584 evidence rows