Gut metagenomes of adults with type 2 diabetes, Kanazawa
32 gut metagenome samples from adults with type 2 diabetes in Kanazawa, Japan, treated with an antidiabetic drug; no further design details are given. machine-written summary
32 samples · 32 runs · JP · Adult · 2026 · 0.66 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 224 sample values (collection date, country, latitude, location locality, longitude, subject id, timepoint) |
| ✓ Abstract / description | 64 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
longitudinal
16 of 16 people sampled more than once (32 samples; median 2, up to 2 per person) · follow-up median 12 mo (max 12 mo) · median interval between samples 12 mo (time from timepoint labels). Schedule stated by the source: “Samples collected at day 0 and month 12 for subjects treated with antidiabetic drug” (time origin: intervention_start); stated follow-up 12 mo.
Each row is one person (16 shown); dots are samples at days since that person's first sample.
Genera, mean relative abundance over 1 profiled gut samples of this project (Sandpiper SingleM profiles, GTDB R232; low-depth and non-metagenome profiles left out).
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 32 | 100% | ||||
| country | 32 | 100% | 32 | |||
| health_condition | 32 | 100% | 32 | |||
| subject_id | 32 | 100% | 32 | |||
| collection_date | 32 | 100% | 32 | |||
| detailed_location | 32 | 100% | ||||
| health_condition_detail | 32 | 100% | 32 | |||
| latitude | 32 | 100% | 32 | |||
| location_locality | 32 | 100% | 32 | |||
| longitude | 32 | 100% | 32 | |||
| timepoint_label | 32 | 100% | 32 |
Archive description
Metagenome sequencing for persons treated with antidiabetic drug
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of adult by deterministic_prior with confidence 0.90. Assay shotgun_dna.
- host external_curation.infant_catalog · “infant triage reason_code age_adult_only”
- body site external_curation.infant_catalog · “body_site_call gut”
- life stage external_curation.infant_catalog · “infant triage reason_code age_adult_only”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN56268739 | collection_date | 2021-07-30 | R1 | 0.90 | biosample.attribute:collection_date | 2021-07-30 |
| SAMN56268739 | country | JP | R1 | 0.90 | sample.attr.geo_loc_name | Japan: Kanazawa |
| SAMN56268739 | health_condition | type2_diabetes | R4 | 0.50 | study.description | persons treated with antidiabetic drug |
| SAMN56268739 | health_condition_detail | Antidiabetic drug treatment; likely type 2 diabetes or prediabetes | R4 | 0.50 | study.description | persons treated with antidiabetic drug |
| SAMN56268739 | latitude | 36.5500 | R1 | 0.90 | biosample.attribute:lat_lon | 36.55 N 136.67 E |
| SAMN56268739 | location_locality | Kanazawa | R1 | 0.85 | biosample.attribute:geo_loc_name | Japan: Kanazawa |
| SAMN56268739 | longitude | 136.6700 | R1 | 0.90 | biosample.attribute:lat_lon | 36.55 N 136.67 E |
| SAMN56268739 | subject_id | 4 | R1 | 0.70 | sample.name_rule:source_material_id | SG4D0 |
| SAMN56268739 | timepoint_label | day 0 | R1 | 0.70 | sample.name_rule:source_material_id | SG4D0 |
Sequencing
32 runs over 32 samples · mean 0.67 Gbp per run (median 0.66 Gbp, total 21.52 Gbp; 32 runs with a base count) · layout PAIRED 32 · platform ILLUMINA 32 · models Illumina MiSeq (32) · 3% of runs with a Sandpiper profile · first public 2026-03-08
Authors (0)
No author record.
Downloads
PRJNA1430171.csv.gz (1.8 KB) · parquet (71.4 KB) — all 32 samples, every field with route and confidence · PRJNA1430171_determinations.csv.gz (2.6 KB) — 288 evidence rows