PacBio long-read gut metagenomes, UC FMT cohort, Yunnan
7 samples from a Yunnan ulcerative colitis cohort undergoing fecal microbiota transplantation (3 FMTs), sequenced by PacBio long-read metagenomics. machine-written summary
7 samples · 7 runs · CN · Age unknown · 2026 · 106.73 Gbp / sample
Checked this project's papers and archive records yourself? Mark it human-verified.
what each source gave
| ✓ Sequence archive | 35 sample values (country, latitude, location region, longitude, subject id) |
| ✓ Abstract / description | 14 sample values (health condition, health condition detail) |
| – Full text | no open-access full text linked |
| – Supplementary tables | no supplementary tables available (or none open access) |
| – External resources | not covered by the external resources we ingest |
| – User contribution | nothing uploaded yet |
| – Human verified | not yet checked by a person · I checked this project — verify it |
intervention — arms not resolved
Faecal microbiota transplantation design single_arm_before_after · population ulcerative_colitis · Fecal microbiota transplantation, 3 FMTs in UC patients
“a UC cohort from Yunnan with 3 FMTs” — bioproject.description (study level; per-sample arms are in the intervention column below)
longitudinal — not resolvedFMT donor → recipient — not resolved
3 of 4 people sampled more than once (6 samples; median 2, up to 2 per person). Schedule stated by the source: “pre-FMT and post-FMT stool per recipient (BioSample DESCRIPTION: pre-FMT 074; post-FMT 074)” (time origin: transplant).
1 FMT donor sample + pre/post-FMT samples of 3 UC recipients (074, 076, 077); donor–recipient assignment not explicitly stated.
No Sandpiper profile for this project's samples yet.
| field | samples | coverage | R1 | R2 | R3 | R4 |
|---|---|---|---|---|---|---|
| age_category | 0 | 0% | ||||
| country | 7 | 100% | 7 | |||
| health_condition | 7 | 100% | 7 | |||
| subject_id | 7 | 100% | 7 | |||
| detailed_location | 7 | 100% | ||||
| health_condition_detail | 7 | 100% | 7 | |||
| latitude | 7 | 100% | 7 | |||
| location_region | 7 | 100% | 7 | |||
| longitude | 7 | 100% | 7 |
Archive description
PacBio Long-reads Sequencing for FMT (a UC cohort from Yunnan with 3 FMTs)
How this project entered the registry
Classified as human gut / stool shotgun DNA metagenome of age unknown by opus_adjudicated with confidence 0.60. Assay shotgun_dna.
- host study.description · “a UC cohort from Yunnan with 3 FMTs”
- body site study.title · “PacBio Long-reads Sequencing for FMT”
Evidence examples (one per field × route)
| sample | field | value | route | conf. | source | quote |
|---|---|---|---|---|---|---|
| SAMN61046827 | country | CN | R1 | 0.90 | sample.attr.geo_loc_name | China: Yunnan |
| SAMN61046827 | health_condition | ulcerative_colitis | R4 | 0.50 | study.description | UC cohort from Yunnan |
| SAMN61046827 | health_condition_detail | Ulcerative colitis patients undergoing FMT | R4 | 0.50 | study.description | UC cohort from Yunnan |
| SAMN61046827 | latitude | 21.8100 | R1 | 0.90 | biosample.attribute:lat_lon | 21.81 N 101.11 E |
| SAMN61046827 | location_region | Yunnan | R1 | 0.85 | biosample.attribute:geo_loc_name | China: Yunnan |
| SAMN61046827 | longitude | 101.1100 | R1 | 0.90 | biosample.attribute:lat_lon | 21.81 N 101.11 E |
| SAMN61046827 | subject_id | 074 | R1 | 0.70 | sample.name_rule:alias | 074UC00 |
Sequencing
7 runs over 7 samples · mean 90.79 Gbp per run (median 106.73 Gbp, total 635.56 Gbp; 7 runs with a base count) · layout SINGLE 7 · platform PACBIO_SMRT 7 · models PacBio RS (7) · 0% of runs with a Sandpiper profile · first public 2026-06-25
Authors (0)
No author record.
Downloads
PRJNA1480958.csv.gz (1.1 KB) · parquet (69.8 KB) — all 7 samples, every field with route and confidence · PRJNA1480958_determinations.csv.gz (1.0 KB) — 49 evidence rows